HHsearch alignment of GI: 254780625 and MMDB domain: 3gpu_A_133-256
>3gpu_A (A:133-256) DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* 3jr5_A* ...
Probab=100.00 E-value=7e-45 Score=308.21 Aligned_cols=124 Identities=40% Similarity=0.719 Sum_probs=118.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 55533221110678887420145421001112654356413689999998717877831222200101589999999987
Q gi|254780625|r 142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEI 221 (289)
Q Consensus 142 lGpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i 221 (289)
||||||+++|+.++|.+.+++++++||++||||++||||||||+|||||+|||||.+++++|+++| +.+|++++
T Consensus 1 LGPDpL~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~ihP~~~~~~Ls~~~------~~~L~~~i 74 (124)
T 3gpu_A 1 LGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKE------IERLHEEM 74 (124)
T ss_dssp CCCCTTSTTSCHHHHHHHHHTCCSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHH------HHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHH------HHHHHHHH
T ss_conf 343211000014666555216775567850107526303412578899881688477565554666------76789999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf 88767654218875531116778778741331665738771078778878999987812063877679
Q gi|254780625|r 222 QKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 222 ~~vl~~a~~~gG~~~~~~~~~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289)
++||.+|++.+| ..++||+|+|++| ++||++|+++++|||+|||||+|||
T Consensus 75 ~~vl~~ai~~~~-----------------~~~~vy~r~g~~C-~~CG~~I~~~~~~~R~t~~CP~CQK 124 (124)
T 3gpu_A 75 VATIGEAVMKGQ-----------------HHLYVYGRQGNPC-KRCGTPIEKTVVAGRGTHYCPRCQR 124 (124)
T ss_dssp HHHHHHHHC----------------------CCSTTCTTSBC-TTTCCBCEEEEETTEEEEECTTTCC
T ss_pred HHHHHHHHHCCC-----------------CCEEECCCCCCCC-CCCCCEEEEEEECCCCCEECCCCCC
T ss_conf 999999997578-----------------5179818997977-9999989999999981198501139