Query gi|254780625|ref|YP_003065038.1| formamidopyrimidine-DNA glycosylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 289
No_of_seqs 122 out of 2796
Neff 7.7
Searched_HMMs 33803
Date Wed Jun 1 15:13:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780625.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1k3x_A Endonuclease VIII; hyd 100.0 0 0 319.8 9.9 135 142-289 1-138 (138)
2 >1tdz_A Formamidopyrimidine-DN 100.0 7E-45 0 307.9 10.6 133 149-289 3-135 (136)
3 >3gpu_A DNA glycosylase; DNA g 100.0 7E-45 0 308.2 9.7 124 142-289 1-124 (124)
4 >3a46_A Formamidopyrimidine-DN 100.0 9.4E-43 0 294.2 3.9 129 154-289 1-144 (146)
5 >1tdz_A Formamidopyrimidine-DN 100.0 2E-33 5.9E-38 234.4 11.5 136 1-146 1-136 (136)
6 >1tdh_A NEI endonuclease VIII- 100.0 3.1E-35 9.2E-40 246.0 0.3 112 163-289 2-132 (209)
7 >3a46_A Formamidopyrimidine-DN 100.0 1.3E-32 3.9E-37 229.1 8.9 141 1-150 1-143 (143)
8 >1ee8_A MUTM (FPG) protein; be 100.0 4.9E-30 1.4E-34 212.6 7.7 96 142-243 1-98 (99)
9 >1k82_A Formamidopyrimidine-DN 100.0 1.5E-29 4.4E-34 209.5 7.5 97 143-245 1-97 (97)
10 >3gpu_A DNA glycosylase; DNA g 100.0 2.9E-28 8.6E-33 201.2 11.5 130 2-141 1-132 (132)
11 >1tdh_A NEI endonuclease VIII- 100.0 1.9E-29 5.7E-34 208.8 3.9 127 1-134 1-132 (133)
12 >1k82_A Formamidopyrimidine-DN 99.9 6.9E-27 2E-31 192.4 13.0 128 2-142 1-128 (128)
13 >1k3x_A Endonuclease VIII; hyd 99.9 3.6E-27 1.1E-31 194.2 9.2 124 2-141 1-124 (124)
14 >1ee8_A MUTM (FPG) protein; be 99.9 2.8E-27 8.4E-32 194.8 8.5 119 2-140 1-119 (120)
15 >1mu5_A Type II DNA topoisomer 99.8 8.8E-22 2.6E-26 159.6 4.7 81 142-230 1-81 (82)
16 >1k82_A Formamidopyrimidine-DN 99.5 2.1E-14 6.1E-19 112.2 3.8 43 246-289 1-43 (43)
17 >1ee8_A MUTM (FPG) protein; be 99.4 3.3E-14 9.7E-19 110.9 3.2 43 246-289 2-44 (47)
18 >2zbk_B Type 2 DNA topoisomera 98.2 2E-06 6E-11 60.9 5.5 73 143-223 2-74 (82)
19 >2zkq_m 40S ribosomal protein 96.4 0.0047 1.4E-07 39.3 4.5 50 164-222 23-72 (88)
20 >2vqe_M 30S ribosomal protein 96.3 0.0027 7.9E-08 40.8 3.0 48 165-221 13-60 (64)
21 >3i1m_M 30S ribosomal protein 96.0 0.0038 1.1E-07 39.9 2.3 47 165-220 13-59 (63)
22 >3doa_A Fibrinogen binding pro 95.5 0.0086 2.6E-07 37.6 2.7 49 145-197 5-53 (70)
23 >3fut_A Dimethyladenosine tran 86.5 0.83 2.5E-05 24.8 3.8 58 155-222 8-65 (68)
24 >2jrp_A Putative cytoplasmic p 74.9 1.7 4.9E-05 22.9 1.9 26 262-288 3-28 (51)
25 >2i0z_A NAD(FAD)-utilizing deh 71.0 6.2 0.00018 19.2 4.1 50 162-222 17-66 (67)
26 >3fyd_A Probable dimethyladeno 68.2 2.2 6.5E-05 22.1 1.3 66 153-226 9-83 (85)
27 >3ftd_A Dimethyladenosine tran 67.5 4 0.00012 20.4 2.5 47 158-223 200-246 (249)
28 >2jne_A Hypothetical protein Y 65.8 4.2 0.00012 20.3 2.4 26 261-287 62-87 (101)
29 >3bbn_M Ribosomal protein S13; 65.6 0.52 1.5E-05 26.1 -2.3 41 164-208 57-97 (145)
30 >1i7d_A DNA topoisomerase III; 61.6 8.7 0.00026 18.3 3.3 64 202-287 57-121 (136)
31 >2elo_A Zinc finger protein 40 60.6 2.3 6.7E-05 22.0 0.2 11 279-289 7-17 (37)
32 >1vd4_A Transcription initiati 57.8 5.1 0.00015 19.8 1.6 29 259-288 13-46 (62)
33 >2vf7_A UVRA2, excinuclease AB 56.9 4 0.00012 20.4 1.0 32 256-288 34-68 (77)
34 >3cng_A Nudix hydrolase; struc 56.6 5.2 0.00015 19.7 1.5 26 262-288 5-32 (37)
35 >1mty_D Methane monooxygenase 53.9 13 0.00037 17.2 3.1 23 262-285 4-37 (55)
36 >2edu_A Kinesin-like protein K 47.2 19 0.00055 16.2 4.7 47 175-221 43-90 (98)
37 >3ga8_A HTH-type transcription 46.0 19 0.00057 16.1 3.2 17 160-176 59-75 (78)
38 >2j3l_A Prolyl-tRNA synthetase 44.9 15 0.00046 16.7 2.4 18 256-274 209-226 (278)
39 >2inp_A Phenol hydroxylase com 41.8 15 0.00045 16.7 2.0 22 265-286 3-32 (45)
40 >1l1o_C Replication protein A 40.9 10 0.0003 17.9 1.0 15 96-110 78-92 (162)
41 >2f9i_B Acetyl-coenzyme A carb 40.3 3 8.8E-05 21.3 -1.9 25 262-288 32-56 (61)
42 >3kbo_A Glyoxylate/hydroxypyru 40.0 13 0.00039 17.2 1.4 55 170-224 60-114 (130)
43 >2i0z_A NAD(FAD)-utilizing deh 39.0 25 0.00073 15.4 4.1 64 15-81 12-80 (131)
44 >2dlo_A Thyroid receptor-inter 39.0 8 0.00024 18.5 0.2 31 256-287 11-41 (47)
45 >1i4w_A Mitochondrial replicat 37.5 13 0.0004 17.1 1.1 52 158-222 12-66 (88)
46 >1dgs_A DNA ligase; AMP comple 36.8 16 0.00049 16.5 1.5 21 261-286 89-109 (111)
47 >1nui_A DNA primase/helicase; 36.4 17 0.0005 16.4 1.5 27 261-289 15-41 (65)
48 >2f4m_A Peptide N-glycanase; g 35.8 11 0.00032 17.7 0.4 27 261-288 8-47 (68)
49 >1twf_B DNA-directed RNA polym 34.9 20 0.0006 15.9 1.7 25 262-288 8-32 (70)
50 >1qyr_A KSGA, high level kasug 34.6 25 0.00073 15.4 2.1 42 177-224 210-251 (252)
51 >2akl_A PHNA-like protein PA01 33.3 13 0.00038 17.2 0.5 24 261-288 28-51 (62)
52 >2f1z_A Ubiquitin carboxyl-ter 32.9 15 0.00045 16.7 0.8 18 272-289 51-68 (81)
53 >3bzc_A TEX; helix-turn-helix, 32.8 31 0.00092 14.7 3.8 36 175-210 13-49 (70)
54 >2r6f_A Excinuclease ABC subun 32.6 31 0.00092 14.7 2.9 32 256-288 35-69 (78)
55 >2k4x_A 30S ribosomal protein 32.4 18 0.00054 16.2 1.1 26 259-287 17-42 (55)
56 >2owo_A DNA ligase; protein/DN 32.1 26 0.00077 15.2 1.9 16 177-193 134-149 (160)
57 >1ffy_A Isoleucyl-tRNA synthet 32.0 8.1 0.00024 18.5 -0.7 10 280-289 7-16 (22)
58 >1nb8_A Ubiquitin carboxyl-ter 31.1 21 0.00063 15.8 1.3 17 273-289 52-68 (81)
59 >2nut_A Protein transport prot 30.3 27 0.0008 15.1 1.7 13 149-161 249-261 (273)
60 >2kdx_A HYPA, hydrogenase/urea 29.8 22 0.00065 15.7 1.2 23 262-288 75-97 (119)
61 >2duy_A Competence protein com 28.9 36 0.0011 14.3 2.7 41 175-218 30-70 (75)
62 >3eh1_A Protein transport prot 28.1 18 0.00055 16.2 0.6 16 113-128 219-234 (380)
63 >1m2v_B SEC24, protein transpo 27.9 29 0.00087 14.9 1.6 16 113-128 256-271 (408)
64 >2d8z_A Four and A half LIM do 27.5 18 0.00053 16.3 0.4 29 258-287 3-31 (42)
65 >2p6r_A Afuhel308 helicase; pr 26.9 31 0.0009 14.8 1.5 19 177-196 3-21 (68)
66 >3ir9_A Peptide chain release 25.5 41 0.0012 13.9 2.6 13 260-273 32-44 (50)
67 >1mek_A Protein disulfide isom 25.4 21 0.00062 15.8 0.4 10 56-65 23-32 (120)
68 >1odh_A MGCM1; transcription f 25.2 30 0.0009 14.8 1.2 20 260-280 110-129 (174)
69 >2qkd_A Zinc finger protein ZP 24.4 28 0.00081 15.1 0.9 26 261-287 15-49 (62)
70 >2dar_A PDZ and LIM domain pro 23.6 26 0.00078 15.2 0.7 32 255-287 19-51 (56)
71 >3feu_A Putative lipoprotein; 23.5 11 0.00031 17.7 -1.4 10 167-176 65-74 (97)
72 >2inc_A Toluene, O-xylene mono 21.8 26 0.00077 15.2 0.3 21 265-285 37-64 (94)
73 >2d8x_A Protein pinch; LIM dom 21.7 26 0.00077 15.2 0.3 15 258-272 2-16 (30)
74 >3i3t_A Ubiquitin carboxyl-ter 21.3 48 0.0014 13.5 1.6 17 273-289 92-108 (124)
75 >1m2o_A SEC23, protein transpo 21.1 35 0.001 14.4 0.9 18 112-129 214-231 (385)
76 >3h0g_B DNA-directed RNA polym 20.5 29 0.00087 14.9 0.4 10 279-288 23-32 (68)
No 1
>>1k3x_A Endonuclease VIII; hydrolase/DNA; HET: BRU PED; 1.25A {Escherichia coli} (A:125-262)
Probab=100.00 E-value=0 Score=319.83 Aligned_cols=135 Identities=25% Similarity=0.491 Sum_probs=125.7
Q ss_pred CCCCCCCCCCHHHHHHHHHH---CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 55533221110678887420---145421001112654356413689999998717877831222200101589999999
Q gi|254780625|r 142 LGPEPADNSFNAIYLTHQFH---KKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLI 218 (289)
Q Consensus 142 lGpD~l~~~~~~~~~~~~l~---~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~ 218 (289)
||||||+++|+.+.|.+.+. +++++||++||||++||||||||+|||||+|||||++++++||++| +.+|+
T Consensus 1 LGpDpl~~~~~~~~~~~~l~~~r~~~~~ik~~LlDQ~~iaGiGNiy~dEiLf~a~ihP~~~~~~Ls~~~------~~~L~ 74 (138)
T 1k3x_A 1 VGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQ------LDALA 74 (138)
T ss_dssp CCCBTTCTTCCHHHHHHHHHSTTTTTSCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHH------HHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEHEHHHHH------HHHHH
T ss_conf 699879857768999998765310026899998427743465689999999860048766101002778------99999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf 98788767654218875531116778778741331665738771078778878999987812063877679
Q gi|254780625|r 219 QEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 219 ~~i~~vl~~a~~~gG~~~~~~~~~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289)
.+++++|..|++.||++..++.+ +++.+++||+|+|+|| |+||++|++++++||+|||||+|||
T Consensus 75 ~~i~~vl~~ai~~gg~~~~~~~~------~~~~~~~v~~r~g~~C-~~Cg~~I~~~~~~gR~t~~CP~CQk 138 (138)
T 1k3x_A 75 HALLEIPRFSYATRGQVDENKHH------GALFRFKVFHRDGEPC-ERCGSIIEKTTLSSRPFYWCPGCQH 138 (138)
T ss_dssp HHHHHHHHHHHHHCC---------------CCCCCSSTTCTTSBC-TTTCCBCEEEEETTEEEEECTTTCC
T ss_pred HHHHHHHHHHHHCCCEECCCCCC------CCEEEEEEECCCCCCC-CCCCCEEEEEEECCCCCEECCCCCC
T ss_conf 99999998785528664777888------8446889815487969-9999899999989890389914269
No 2
>>1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM, FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A {Lactococcus lactis} (A:137-272)
Probab=100.00 E-value=7e-45 Score=307.90 Aligned_cols=133 Identities=44% Similarity=0.783 Sum_probs=127.1
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11106788874201454210011126543564136899999987178778312222001015899999999878876765
Q gi|254780625|r 149 NSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDA 228 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~vl~~a 228 (289)
++||.++|.+.+++++++||++||||++||||||||+|||||+|+|||++++++||++| +.+|++++++||.+|
T Consensus 3 d~fd~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGNiy~~EiLf~A~IhP~~~~~~Ls~~~------~~~L~~~~~~vl~~a 76 (136)
T 1tdz_A 3 EDFDEKLFREKLRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESS------IHLLHDSIIEILQKA 76 (136)
T ss_dssp TTCCHHHHHHHHHHCCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHH------HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCEEEEEECCEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_conf 22120333322000231100167505255056767255576564432533222020100------466787763333446
Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf 4218875531116778778741331665738771078778878999987812063877679
Q gi|254780625|r 229 IDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 229 ~~~gG~~~~~~~~~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289)
++.||+++.++ +.++..|+|+.+|+||+|+|+|| ++||++|++++++||+|||||.|||
T Consensus 77 i~~gg~~~~~~-~~~~~~~~~~~~~~vy~r~g~~C-~~CG~~I~~~~~~gR~t~~CP~CQ~ 135 (136)
T 1tdz_A 77 IKLGGSSIRTY-SALGSTGKMQNELQVYGKTGEKC-SRCGAEIQKIKVAGRGTHFCPVCQQ 135 (136)
T ss_dssp HHTTCCCC------CCCCCCGGGGCSSTTCTTSBC-TTTCCBCEEEEETTEEEEECTTTSC
T ss_pred HHCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCC-CCCCCEEEEEEECCCCEEECCCCCC
T ss_conf 64488620145-56788887753047828898979-9999999999989990299916469
No 3
>>3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* 3jr5_A* ... (A:133-256)
Probab=100.00 E-value=7e-45 Score=308.21 Aligned_cols=124 Identities=40% Similarity=0.719 Sum_probs=118.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 55533221110678887420145421001112654356413689999998717877831222200101589999999987
Q gi|254780625|r 142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEI 221 (289)
Q Consensus 142 lGpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i 221 (289)
||||||+++|+.++|.+.+++++++||++||||++||||||||+|||||+|||||.+++++|+++| +.+|++++
T Consensus 1 LGPDpL~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~ihP~~~~~~Ls~~~------~~~L~~~i 74 (124)
T 3gpu_A 1 LGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKE------IERLHEEM 74 (124)
T ss_dssp CCCCTTSTTSCHHHHHHHHHTCCSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHH------HHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHH------HHHHHHHH
T ss_conf 343211000014666555216775567850107526303412578899881688477565554666------76789999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf 88767654218875531116778778741331665738771078778878999987812063877679
Q gi|254780625|r 222 QKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 222 ~~vl~~a~~~gG~~~~~~~~~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289)
++||.+|++.+| ..++||+|+|++| ++||++|+++++|||+|||||+|||
T Consensus 75 ~~vl~~ai~~~~-----------------~~~~vy~r~g~~C-~~CG~~I~~~~~~~R~t~~CP~CQK 124 (124)
T 3gpu_A 75 VATIGEAVMKGQ-----------------HHLYVYGRQGNPC-KRCGTPIEKTVVAGRGTHYCPRCQR 124 (124)
T ss_dssp HHHHHHHHC----------------------CCSTTCTTSBC-TTTCCBCEEEEETTEEEEECTTTCC
T ss_pred HHHHHHHHHCCC-----------------CCEEECCCCCCCC-CCCCCEEEEEEECCCCCEECCCCCC
T ss_conf 999999997578-----------------5179818997977-9999989999999981198501139
No 4
>>3a46_A Formamidopyrimidine-DNA glycosylase; helix two turns helix, zinc-LESS finger, hydrolase, THF, glycosidase, lyase, multifunctional enzyme; HET: DNA 3DR; 2.20A {Acanthamoeba polyphaga mimivirus} PDB: 3a45_A* 3a42_A (A:144-289)
Probab=100.00 E-value=9.4e-43 Score=294.24 Aligned_cols=129 Identities=23% Similarity=0.239 Sum_probs=121.5
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCC-CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 788874201454210011126543-5641368999999871787783122220010158999999998788767654218
Q gi|254780625|r 154 IYLTHQFHKKNSNLKNALLNQKIV-AGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAG 232 (289)
Q Consensus 154 ~~~~~~l~~~~~~Ik~~LlDQ~~i-aGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~vl~~a~~~g 232 (289)
++|.+.+++++++||++||||++| |||||||+|||||+|||||++++++|+++| +.+|+++++.||..|++.|
T Consensus 1 e~~~~~l~~~~~~Ik~~LlDQ~~i~AGIGNiy~dEiLf~A~IhP~~~~~~Ls~~~------~~~L~~~i~~vl~~ai~~g 74 (146)
T 3a46_A 1 DIDISKIKKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQE------IENLWYWIKYETKLAYDSN 74 (146)
T ss_dssp CCCGGGGGGCCSBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHH------HHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHCCCCCHHCCCCHHH------HHHHHHHHHHHHHHHHHCC
T ss_conf 9999987542022346644367366485389999999975048334011099999------9999999999999999818
Q ss_pred CCCCC------------CCCCCCCCCCCCHHHEEEECCCCCC--CCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf 87553------------1116778778741331665738771--078778878999987812063877679
Q gi|254780625|r 233 GSSLR------------DYVHIDGSIGYFQNAFSVYGKTGEP--CLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 233 G~~~~------------~~~~~~g~~g~~~~~~~vy~r~g~~--C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289)
|+++. +|.+.++.+|+++.+++||+|+|+| | ++||++|++++++||+|||||.|||
T Consensus 75 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~vy~r~g~p~~C-~~Cg~~I~~~~~~gR~t~~CP~CQ~ 144 (146)
T 3a46_A 75 HIGYMVNLENESSKIGRKNYHPNIHPTEKEFDFLVYRKKKDPNGN-KVIADKIIGSGKNKRTTYWAPAIQK 144 (146)
T ss_dssp CSSSCGGGHHHHTTSCCCCCSTTCCCSCSSCCCSSTTCSBCTTSC-BCEEECCSCCTTCCCCEEECTTTCB
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC-CCCCCEEEEEECCCEEEEECCCCCC
T ss_conf 976410235665667873655565555664168997999998888-7469779997818813399936475
No 5
>>1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM, FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A {Lactococcus lactis} (A:1-136)
Probab=100.00 E-value=2e-33 Score=234.37 Aligned_cols=136 Identities=32% Similarity=0.576 Sum_probs=128.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 96764367889889998679778899964833265787789997289889999605308999503553100152553279
Q gi|254780625|r 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSF 80 (289)
Q Consensus 1 MPElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~ 80 (289)
||||||||++++.|++.+.|++|++|++..++..+..+++|.+.|.|++|.+|+|+||||++.||++.+|++||||+|+|
T Consensus 1 MPElPEVe~~~~~L~~~~~g~~i~~v~~~~~~~~~~~~~~~~~~l~G~~i~~v~r~GK~l~~~l~~~~~L~~HlgM~G~~ 80 (136)
T 1tdz_A 1 MPELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKY 80 (136)
T ss_dssp --CHHHHHHHHHHHHHHHTTCBCCEEEESCGGGBTTCHHHHHHHHTTCBEEEEEEETTEEEEEETTTEEEEEECTTTCEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCCEEEEEECCCEEEEEEECCCCCEEEEECCCCEE
T ss_conf 98578999999999997279999999989876537874889977499899899815449998854897146676046558
Q ss_pred EEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCCCCCC
Q ss_conf 981478542245876633899970688760489998158766410014553010053235655533
Q gi|254780625|r 81 IIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTLGPEP 146 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~lGpD~ 146 (289)
++.+.+. ..++|.|+++.|+++ .+.|.|+|+||.+++++..+....+.+++|||||
T Consensus 81 ~~~~~~~----~~~kh~~l~l~l~~~------~l~~~d~r~fG~~~l~~~~~~~~~~~l~~LGPdP 136 (136)
T 1tdz_A 81 RLATLDA----PREKHDHLTMKFADG------QLIYADVRKFGTWELISTDQVLPYFLKKKIGPEP 136 (136)
T ss_dssp EEECTTC----CCCTTEEEEEECSSC------EEEEECTTSCCEEEEEEGGGHHHHHHHHTCCCCS
T ss_pred EEECCCC----CCCCCCEEEEECCCC------CEEEEECCCCCEEEECCCCCCCCCHHHCCCCCCC
T ss_conf 8752668----864433135650488------1899741434301002544111101320368510
No 6
>>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} (A:156-364)
Probab=100.00 E-value=3.1e-35 Score=245.95 Aligned_cols=112 Identities=20% Similarity=0.209 Sum_probs=98.3
Q ss_pred CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC----
Q ss_conf 4542100111265435641368999999871787783122220010158999999998788767654218875531----
Q gi|254780625|r 163 KNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRD---- 238 (289)
Q Consensus 163 ~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~vl~~a~~~gG~~~~~---- 238 (289)
++++||++||||++||||||||+|||||+|+|||++++++|++.+ +.+|+.+|+.||..+++.++.....
T Consensus 2 k~~pIk~~LLDQ~~iaGIGN~~~dEILf~A~IhP~~~~~~L~~~~------~~~L~~~i~~v~~~~~~~~~~~~~~~~~~ 75 (209)
T 1tdh_A 2 FDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEAL------QQHRPSPELTLSQKIRTKLQNPDLLELCH 75 (209)
T ss_dssp GGSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGGG------C-----CCSCHHHHHHHTTTSCCHHHHHH
T ss_pred CCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHH------HCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 366288998447701566434899999982899666312345766------41344210002344344667899999999
Q ss_pred ---------------CCCCCCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf ---------------116778778741331665738771078778878999987812063877679
Q gi|254780625|r 239 ---------------YVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 239 ---------------~~~~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289)
+..+.+..++|+.+|+||+|.|++| ++|| +||+|||||.||+
T Consensus 76 ~v~~~~~~~~~~~l~~~r~~~~~~~~~~~~~vygr~g~~c-~~c~--------ggRtt~~CP~CQ~ 132 (209)
T 1tdh_A 76 SVPKEVVQLGGRGYGSESGEEDFAAFRAWLRCYGMPGMSS-LQDR--------HGRTIWFQGDPGP 132 (209)
T ss_dssp HHHHHHHHHHTTCTTSSCHHHHHHHHHHHCSSTTCTTCEE-EECT--------TSCEEEESSCCCT
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHCEEEECCCCCCC-CCCC--------CCCEEEECCCCCC
T ss_conf 9999999808987658877776300341473417899824-5379--------9978986888866
No 7
>>3a46_A Formamidopyrimidine-DNA glycosylase; helix two turns helix, zinc-LESS finger, hydrolase, THF, glycosidase, lyase, multifunctional enzyme; HET: DNA 3DR; 2.20A {Acanthamoeba polyphaga mimivirus} PDB: 3a45_A* 3a42_A (A:1-143)
Probab=99.98 E-value=1.3e-32 Score=229.07 Aligned_cols=141 Identities=21% Similarity=0.193 Sum_probs=124.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 967643678898899986797788999648332657--877899972898899996053089995035531001525532
Q gi|254780625|r 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFD--FPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSG 78 (289)
Q Consensus 1 MPElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~--~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G 78 (289)
||||||||+++++|++.++|++|+.|++.+++..+. .+.++.+.|.|++|.+|+|+||||+++|+++.+|++||||+|
T Consensus 1 MPELPEVe~~~~~L~~~l~g~~i~~v~~~~~~~~~~~~~~~~~~~~l~G~~i~~v~r~GK~l~~~l~~~~~L~~HlgM~G 80 (143)
T 3a46_A 1 MPEGPEVALTADILEKYFKGKTLEYIDFISGRYSKSEPEGYDDFIANLPLKVSNVDTKGKFLWFELFDPNDKSNKWYIWN 80 (143)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCEEEEEEECSSHHHHSCCBTHHHHHHTCCEEEEEEEEETTEEEEEEEETTEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCCCCCEEEE
T ss_conf 97479999999999998589999899988885225788668999723785799999877699999668864245655998
Q ss_pred EEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 799814785422458766338999706887604899981587664100145530100532356555332211
Q gi|254780625|r 79 SFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTLGPEPADNS 150 (289)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~lGpD~l~~~ 150 (289)
+|++...+.. .+.+|.|+.+.|+++. .++|.|+|+||.++++++.... .+.+++||||||+++
T Consensus 81 ~~~~~~~~~~---~~~k~~~~~l~~~~~~-----~L~f~d~r~fg~~~l~~~~~~~-~~~l~~LGpDpL~~d 143 (143)
T 3a46_A 81 TFGLTGMWSL---FEAKYTRAVLSFDNEL-----MAYFSDMRNFGTFKFSNSEKEL-KRKLNELGPDFLKND 143 (143)
T ss_dssp ECTTTEEEES---SCCTTEEEEEEEGGGC-----EEEEEESSCCCEEEEECCHHHH-HHHHTTSCCBTTTCS
T ss_pred EEEECCCEEE---CCCCCCEEEEECCCCE-----EEEEEECCCCCEEEEECHHHHH-HHHHHHCCCCHHHHH
T ss_conf 8897254044---2577633554023205-----9999742413168872214440-134430376303557
No 8
>>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken structural genomics/proteomics initiative, RSGI; 1.90A {Thermus thermophilus HB8} (A:121-219)
Probab=99.96 E-value=4.9e-30 Score=212.60 Aligned_cols=96 Identities=42% Similarity=0.706 Sum_probs=91.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 55533221110678887420145421001112654356413689999998717877831222200101589999999987
Q gi|254780625|r 142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEI 221 (289)
Q Consensus 142 lGpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i 221 (289)
||||||+++|+.++|.+.+++++++||++||||++||||||||+|||||+|||||++++++||++| +++|+.++
T Consensus 1 LGPDpl~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~viaGiGNiya~EiLf~a~I~P~~~~~~Ls~~~------~~~L~~~i 74 (99)
T 1ee8_A 1 LGPEPLSEAFAFPGFFRGLKESARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEE------ARRLYRAL 74 (99)
T ss_dssp CCCCTTSTTCCHHHHHHHHHTCCSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHH------HHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCHHH------HHHHHHHH
T ss_conf 699878775899999998626875288986158813156698999999974899778822189999------99999999
Q ss_pred HHHHHHHHHCCCCCCCC--CCCCC
Q ss_conf 88767654218875531--11677
Q gi|254780625|r 222 QKVLIDAIDAGGSSLRD--YVHID 243 (289)
Q Consensus 222 ~~vl~~a~~~gG~~~~~--~~~~~ 243 (289)
+++|..|++.||++++| |++.+
T Consensus 75 ~~vl~~ai~~gg~t~~d~~~~~~~ 98 (99)
T 1ee8_A 75 REVLAEAVELGGSTLSDQSYRQPD 98 (99)
T ss_dssp HHHHHHHHHTTCCCCSSCCCCCTT
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 999999998189416665433578
No 9
>>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} (A:129-225)
Probab=99.96 E-value=1.5e-29 Score=209.48 Aligned_cols=97 Identities=38% Similarity=0.687 Sum_probs=94.0
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 55332211106788874201454210011126543564136899999987178778312222001015899999999878
Q gi|254780625|r 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQ 222 (289)
Q Consensus 143 GpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~ 222 (289)
|||||+++|+.+.|.+.+++++++||.+||||++||||||||+|||||+|+|||.+++++||++| +.+|+.+++
T Consensus 1 Gpdpl~~~~~~~~~~~~~~~~~~~ik~~LlDQ~~iaGiGNiyadEiLf~a~I~P~~~~~~Ls~~~------~~~L~~~i~ 74 (97)
T 1k82_A 1 GPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAE------CELLARVIK 74 (97)
T ss_dssp CCCTTSTTSCHHHHHHHHTTCCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHH------HHHHHHHHH
T ss_pred CCCCCCHHCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCHHH------HHHHHHHHH
T ss_conf 99979711199999988506555541378517612667588999999873789778120199999------999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 87676542188755311167787
Q gi|254780625|r 223 KVLIDAIDAGGSSLRDYVHIDGS 245 (289)
Q Consensus 223 ~vl~~a~~~gG~~~~~~~~~~g~ 245 (289)
+||.+|++.||+|++||.+.+|+
T Consensus 75 ~vl~~ai~~gg~t~~d~~~~~G~ 97 (97)
T 1k82_A 75 AVLLRSIEQGGTTLKDFLQSDGK 97 (97)
T ss_dssp HHHHHHHHTTCCCCC--------
T ss_pred HHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999998389846644157898
No 10
>>3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* 3jr5_A* ... (A:1-132)
Probab=99.95 E-value=2.9e-28 Score=201.18 Aligned_cols=130 Identities=32% Similarity=0.547 Sum_probs=116.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC-CC-CCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCE
Q ss_conf 67643678898899986797788999648332-65-78778999728988999960530899950355310015255327
Q gi|254780625|r 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNL-RF-DFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGS 79 (289)
Q Consensus 2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~-~~-~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~ 79 (289)
|||||||++++.|++.+.|++|+.|++.+++. +. ..++++.+.|.|++|++|+|+||||++.|+++ ++++||||+|+
T Consensus 1 PELPEVe~~~~~L~~~~~G~~I~~v~v~~~~~~~~~~~~~~~~~~L~G~~i~~v~r~GK~L~~~~~~~-~ll~HLgMtG~ 79 (132)
T 3gpu_A 1 PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRD-ALISHLRMEGR 79 (132)
T ss_dssp CCHHHHHHHHHHHHHHHTTCBEEEEEESCGGGEEESSSHHHHHHHHTTCBCCEEEEETTEEEEECSSE-EEEEECTTTCE
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHHHCCCCEEEEEEEEEEEEEEEECCC-EEEEEECCCCE
T ss_conf 97379999999999985899998999868874607799699997739988999983113899840464-01100314750
Q ss_pred EEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCC
Q ss_conf 99814785422458766338999706887604899981587664100145530100532356
Q gi|254780625|r 80 FIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRT 141 (289)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~ 141 (289)
|++...+. .+++|.|+.|.|+|+. .+.|.|+|+||.+++++..+...+++|++
T Consensus 80 ~~~~~~~~----~~~k~~~l~l~~~~~~-----~l~f~D~R~fG~v~l~~~~~~~~~~~la~ 132 (132)
T 3gpu_A 80 YAVASALE----PLEPHTHVVFCFTDGS-----ELRYRDVRKFGTMHVYAKEEADRRPPLAE 132 (132)
T ss_dssp EEEEETTS----CCCTTEEEEEEETTSE-----EEEEECTTCCCEEEEEEHHHHTTSTTTTT
T ss_pred EEEECCCC----CCCCCCEEEEEEECCC-----EEEEEEECCCCCEEEECCCCCCCCCCCCC
T ss_conf 47755767----7787740899994597-----16887520245302320243234433243
No 11
>>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} (A:1-133)
Probab=99.95 E-value=1.9e-29 Score=208.76 Aligned_cols=127 Identities=20% Similarity=0.195 Sum_probs=112.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC-----CHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCC
Q ss_conf 9676436788988999867977889996483326578-----77899972898899996053089995035531001525
Q gi|254780625|r 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDF-----PHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLG 75 (289)
Q Consensus 1 MPElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~-----~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~Hlg 75 (289)
||||||||++++.|++.+.|++|++|.+.+++..+.. +++|.+.|.|++|.+|.|+||||+|.|+++.+|++|||
T Consensus 1 MPELPEVe~~~~~L~~~~~G~~I~~v~v~~~~~~~~~~~~~~~~~~~~~L~g~~i~~v~r~GK~l~~~l~~~~~l~~Hlg 80 (133)
T 1tdh_A 1 MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLILSPLPGAQPQQEPLALVFRFG 80 (133)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCCEEEECEECSSCCSCCCCCEEEEEEEEEEEETTEEEEEEEECTTCSSCCCCEEEEEECT
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEC
T ss_conf 98548999999999998589799799982666777555545665178888601799998246544444578617999850
Q ss_pred CCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHH
Q ss_conf 53279981478542245876633899970688760489998158766410014553010
Q gi|254780625|r 76 MSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKY 134 (289)
Q Consensus 76 M~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~ 134 (289)
|||+|++...+ .+++|+|+.+.|++++. ...+.|.|+|+||+++++++.+.+
T Consensus 81 MtG~~~~~~~~-----~~~k~~~l~~~~~~~~~--~~~L~f~D~R~fg~~~l~~~~~~~ 132 (133)
T 1tdh_A 81 MSGSFQLVPRE-----ELPRHAHLRFYTAPPGP--RLALCFVDIRRFGRWDLGGKWQPG 132 (133)
T ss_dssp TTCEEEEEEGG-----GCCTTEEEEEEBCSSSS--CEEEEEECTTCCCEEEESSCCCTT
T ss_pred CCCEEEEEECC-----CCCCCCEEEEEEECCCC--CEEEEEEECCCCCCEEECCCHHHH
T ss_conf 44158995135-----65545449999844898--248999824323430230543531
No 12
>>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} (A:1-128)
Probab=99.95 E-value=6.9e-27 Score=192.37 Aligned_cols=128 Identities=35% Similarity=0.495 Sum_probs=112.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 67643678898899986797788999648332657877899972898899996053089995035531001525532799
Q gi|254780625|r 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSFI 81 (289)
Q Consensus 2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~~ 81 (289)
||||||++++++|++.++|++|+.|++.+++... .++++.+.|.|++|.+|+|+||||++.||++ +|++||||+|+|.
T Consensus 1 PELPEVe~~~~~L~~~l~G~~i~~v~~~~~~~~~-~~~~~~~~L~g~~i~~v~r~GK~l~~~~~~~-~l~~Hl~M~G~~~ 78 (128)
T 1k82_A 1 PELPEVETSRRGIEPHLVGATILHAVVRNGRLRW-PVSEEIYRLSDQPVLSVQRRAKYLLLELPEG-WIIIHLGMSGSLR 78 (128)
T ss_dssp CCHHHHHHHHHHHHHHHBTCEEEEEEESCCBSSS-BCCHHHHHCCSEEBCEEEEETTEEEEECSSC-EEEEECTTTCEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-CCCHHHHHHCCCEEEEEEEEEEEEEEECCCC-CEEEEECCCCEEE
T ss_conf 9737999999999997489999899989887468-7985589837997889975369999971588-2788874664067
Q ss_pred EECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCC
Q ss_conf 8147854224587663389997068876048999815876641001455301005323565
Q gi|254780625|r 82 IEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTL 142 (289)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~l 142 (289)
+...+. .+++|.|+.|.|+++. .+.|.|+|+||+++++++.+... .+++|
T Consensus 79 ~~~~~~----~~~k~~~~~l~~~~g~-----~l~f~d~R~fg~~~l~~~~~~~~--~l~~L 128 (128)
T 1k82_A 79 ILPEEL----PPEKHDHVDLVMSNGK-----VLRYTDPRRFGAWLWTKELEGHN--VLTHL 128 (128)
T ss_dssp EESSSC----CCCTTCCEEEEETTSC-----EEEEECSSCCCEEEEESCSSSST--TTTTC
T ss_pred EEECCC----CCCCCCEEEEEECCCC-----EEEEEECCCEEEEEECCCHHHHH--HHHHC
T ss_conf 774347----9986766999947997-----89998435116798348445505--88754
No 13
>>1k3x_A Endonuclease VIII; hydrolase/DNA; HET: BRU PED; 1.25A {Escherichia coli} (A:1-124)
Probab=99.94 E-value=3.6e-27 Score=194.15 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=111.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 67643678898899986797788999648332657877899972898899996053089995035531001525532799
Q gi|254780625|r 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSFI 81 (289)
Q Consensus 2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~~ 81 (289)
||||||+++++.|++.+.|++|+.|++..+.. +++.+.|.|++|++|+|+||||+|+||++.+|++||||+|+|.
T Consensus 1 PElPEVe~~~~~L~~~~~G~~i~~v~~~~~~~-----~~~~~~l~g~~i~~v~r~GK~l~~~l~~~~~l~~HLgMtG~~~ 75 (124)
T 1k3x_A 1 PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQL-----KTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWR 75 (124)
T ss_dssp CCHHHHHHHHHHHHHHHBTCCCSEEEESSGGG-----TTHHHHHTTCCEEEEEEETTEEEEEETTSCEEEEECTTTCEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEECCCCH-----HHHHHHCCCCEEEEEEECEEEEEEECCCCEEEEECCCCCEEEE
T ss_conf 97489999999999986898999999889854-----5389776998998999750398460478439997045534899
Q ss_pred EECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCC
Q ss_conf 814785422458766338999706887604899981587664100145530100532356
Q gi|254780625|r 82 IEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRT 141 (289)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~ 141 (289)
+...+.. ..+|.|+++.|+++ ..|.|+|+||++++++..+...+++|++
T Consensus 76 ~~~~~~~----~~~~~~~~~~l~~~-------~~f~D~R~fG~~~l~~~~~~~~~~~L~k 124 (124)
T 1k3x_A 76 VVDTGEE----PQTTRVLRVKLQTA-------DKTILLYSASDIEMLRPEQLTTHPFLQR 124 (124)
T ss_dssp EEETTCC----CCCSSCEEEEEECS-------SEEEEEESCCEEEEECTTHHHHSHHHHH
T ss_pred EEEECCC----CCCCEEEEEEECCC-------CEEEEEECCEEEEEECHHHCCCCHHHHH
T ss_conf 9840135----54323689985489-------7699996251799972322110238986
No 14
>>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken structural genomics/proteomics initiative, RSGI; 1.90A {Thermus thermophilus HB8} (A:1-120)
Probab=99.94 E-value=2.8e-27 Score=194.83 Aligned_cols=119 Identities=34% Similarity=0.585 Sum_probs=108.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 67643678898899986797788999648332657877899972898899996053089995035531001525532799
Q gi|254780625|r 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSFI 81 (289)
Q Consensus 2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~~ 81 (289)
|||||||++++.|++.+.|++|+.|++.+++. .++.+.|.|++|++|+|+||||+++||++.+|++||||+|+|.
T Consensus 1 PElPEVe~~~~~l~~~~~g~~i~~v~~~~~~~-----~~~~~~l~g~~i~~v~r~GK~L~~~l~~~~~L~~HLgM~G~~~ 75 (120)
T 1ee8_A 1 PELPEVETTRRRLRPLVLGQTLRQVVHRDPAR-----YRNTALAEGRRILEVDRRGKFLLFALEGGVELVAHLGMTGGFR 75 (120)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEEECSCTTT-----EESGGGGTTEEEEEEEEETTEEEEEETTTEEEEEECTTTCEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC-----CCCHHHCCCCEEEEEEEEEEEEEEEECCCCEEEEECCCEEEEE
T ss_conf 97657999999999982898899999269860-----1201324898998999744799999899988999467437999
Q ss_pred EECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCC
Q ss_conf 81478542245876633899970688760489998158766410014553010053235
Q gi|254780625|r 82 IEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLR 140 (289)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~ 140 (289)
+ .+++|+|++|.|++. .+.|.|+|+||.++++++.+...+++|+
T Consensus 76 ~---------~p~~~~~~~~~~~~~------~l~~~D~Rrfg~~~l~~~~~~~~~~~la 119 (120)
T 1ee8_A 76 L---------EPTPHTRAALVLEGR------TLYFHDPRRFGRLFGVRRGDYREIPLLL 119 (120)
T ss_dssp S---------SCCTTEEEEEEESSC------EEEEECTTCCCEEEEEETTCCTTCTHHH
T ss_pred E---------ECCCCCEEEEEECCC------EEEEECCCCCEEEEEEECCCCCCCHHHH
T ss_conf 7---------259974699996896------6999858721399998577400063788
No 15
>>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} (A:230-311)
Probab=99.84 E-value=8.8e-22 Score=159.57 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=76.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 55533221110678887420145421001112654356413689999998717877831222200101589999999987
Q gi|254780625|r 142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEI 221 (289)
Q Consensus 142 lGpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i 221 (289)
|||||+ +++.+.|.+.+++++++||.+||||++|+||||+|++||||+|||||.+++++|+++| +.+|++++
T Consensus 1 lgpdpl--~~~~~~~~~~l~~~~~~ik~~lldq~~~~GiGn~~a~EiL~~agi~P~~~~~~Ls~~e------~~~L~~~~ 72 (82)
T 1mu5_A 1 VKPHPY--GVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEE------ITRLVETF 72 (82)
T ss_dssp CCCCGG--GCCHHHHHHHSTTCSSCCBHHHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTH------HHHHHHHH
T ss_pred CCCCCC--CCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHH------HHHHHHHH
T ss_conf 557654--0246789999987025552899998651555768999999971899666756599999------99999999
Q ss_pred HHHHHHHHH
Q ss_conf 887676542
Q gi|254780625|r 222 QKVLIDAID 230 (289)
Q Consensus 222 ~~vl~~a~~ 230 (289)
+.++..|+.
T Consensus 73 ~~v~~~a~~ 81 (82)
T 1mu5_A 73 KKYEDFRSP 81 (82)
T ss_dssp HHCCCCCCC
T ss_pred HHHCCCCCC
T ss_conf 863035679
No 16
>>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} (A:226-268)
Probab=99.48 E-value=2.1e-14 Score=112.22 Aligned_cols=43 Identities=51% Similarity=1.057 Sum_probs=41.5
Q ss_pred CCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf 78741331665738771078778878999987812063877679
Q gi|254780625|r 246 IGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 246 ~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289)
+|+|++.++||+|+|+|| ++||++|++++++||+|||||.|||
T Consensus 1 pG~fq~~~~VygR~g~pC-~~Cg~~I~~~~~~~R~t~~Cp~CQk 43 (43)
T 1k82_A 1 PGYFAQELQVYGRKGEPC-RVCGTPIVATKHAQRATFYCRQCQK 43 (43)
T ss_dssp CCSCGGGCSSTTCTTSBC-TTTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCCCCCEEEEECCCCCCC-CCCCCEEEEEEECCCCCEECHHHCC
T ss_conf 777630368948798979-9999988999989974298932249
No 17
>>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken structural genomics/proteomics initiative, RSGI; 1.90A {Thermus thermophilus HB8} (A:220-266)
Probab=99.45 E-value=3.3e-14 Score=110.92 Aligned_cols=43 Identities=47% Similarity=0.955 Sum_probs=41.4
Q ss_pred CCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf 78741331665738771078778878999987812063877679
Q gi|254780625|r 246 IGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 246 ~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289)
+|+|++.|+||+|+|+|| ++||++|++++++||+|||||.|||
T Consensus 2 ~G~fq~~~~VygR~g~pC-~rCg~~I~~~~~~~R~t~~Cp~CQ~ 44 (47)
T 1ee8_A 2 PGGFQTRHAVYGREGLPC-PACGRPVERRVVAGRGTHFCPTCQG 44 (47)
T ss_dssp CCSCGGGCSSTTCTTSBC-TTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCEEEEECCCCCCC-CCCCCEEEEEEECCCCEEECCCCCC
T ss_conf 776520567768896978-8899976899988984499999999
No 18
>>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} (B:229-310)
Probab=98.23 E-value=2e-06 Score=60.90 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=58.8
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 55332211106788874201454210011126543564136899999987178778312222001015899999999878
Q gi|254780625|r 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQ 222 (289)
Q Consensus 143 GpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~ 222 (289)
.|-|.. .+...+...+...-..-|.+...++.|.|||+-+|++||..++|+|..++++|+++| +.+|.++++
T Consensus 2 ~php~g--vd~~~~~ri~~~~~~~~k~i~~aLt~i~GIG~~~A~~I~~~~gi~~~~~~~~Lt~~q------i~~L~~~~~ 73 (82)
T 2zbk_B 2 KPHPYG--VDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEE------ITRLVETFK 73 (82)
T ss_dssp CCCGGG--CCHHHHHHHHTTCSSCCBHHHHHHTTSTTCCHHHHHHHHHHTTCCSSCBSSCCCHHH------HHHHHHHHH
T ss_pred CCCCCC--CHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCHHH------HHHHHCCCC
T ss_conf 258754--426777887750232101334551576467608777666552366334723336788------876411010
Q ss_pred H
Q ss_conf 8
Q gi|254780625|r 223 K 223 (289)
Q Consensus 223 ~ 223 (289)
.
T Consensus 74 ~ 74 (82)
T 2zbk_B 74 K 74 (82)
T ss_dssp H
T ss_pred C
T ss_conf 1
No 19
>>2zkq_m 40S ribosomal protein S18E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_M (m:1-88)
Probab=96.40 E-value=0.0047 Score=39.29 Aligned_cols=50 Identities=18% Similarity=0.390 Sum_probs=40.5
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 54210011126543564136899999987178778312222001015899999999878
Q gi|254780625|r 164 NSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQ 222 (289)
Q Consensus 164 ~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~ 222 (289)
+.+|.-+| +.|-|||.-.|..||..++|+|..++++||++| +.+|-+.+.
T Consensus 23 ~K~i~~AL---t~I~GIG~~~A~~Ic~~lgi~~~~k~~~Lt~~q------i~~l~~~i~ 72 (88)
T 2zkq_m 23 RRKIAFAI---TAIKGVGRRYAHVVLRKADIDLTKRAGELTEDE------VERVITIMQ 72 (88)
T ss_dssp SSBHHHHG---GGSTTCCHHHHHHHHHHHTCCTTSBTTTSCHHH------HHHHHHHHH
T ss_pred CCEEEEEH---HCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHH------HHHHHHHHH
T ss_conf 96873603---024662899999999982999543336399999------999999984
No 20
>>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (M:1-64)
Probab=96.34 E-value=0.0027 Score=40.83 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=38.9
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 421001112654356413689999998717877831222200101589999999987
Q gi|254780625|r 165 SNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEI 221 (289)
Q Consensus 165 ~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i 221 (289)
+.|.-+| +.|-|||.-.+.+||..++|+|..++++||++| +.+|-+.+
T Consensus 13 K~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~~k~~~Lt~~q------i~~i~~~i 60 (64)
T 2vqe_M 13 KRVDVAL---TYIYGIGKARAKEALEKTGINPATRVKDLTEAE------VVRLREYV 60 (64)
T ss_dssp SBHHHHH---TTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHH------HHHHHHHH
T ss_pred CEEEEEE---EEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHH------HHHHHHHH
T ss_conf 6888873---306581899999999982998332215135999------99999987
No 21
>>3i1m_M 30S ribosomal protein S13; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M 2qal_M* 1p6g_M 1p87_M 2aw7_M 2avy_M 2i2u_M 2i2p_M* 2qan_M* 2qb9_M* 2qbb_M* 2qbd_M ... (M:1-63)
Probab=95.97 E-value=0.0038 Score=39.89 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=38.1
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 42100111265435641368999999871787783122220010158999999998
Q gi|254780625|r 165 SNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQE 220 (289)
Q Consensus 165 ~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~ 220 (289)
.+|.-+| +.|-|||.-.|.+||..++|||..++++||++| +.+|-+.
T Consensus 13 K~v~~aL---t~i~GIG~~~A~~Ic~~~gi~~~~k~~~Lt~~q------i~~l~~~ 59 (63)
T 3i1m_M 13 KHAVIAL---TSIYGVGKTRSKAILAAAGIAEDVKISELSEGQ------IDTLRDE 59 (63)
T ss_dssp SCHHHHG---GGSTTCCHHHHHHHHTTTTCCSSCCSTTCCHHH------HHHHHTT
T ss_pred CEEEEEE---ECEECCCHHHHHHHHHHCCCCCCCCCCCCCHHH------HHHHHHH
T ss_conf 6888875---344573899999999991989642346356999------9999988
No 22
>>3doa_A Fibrinogen binding protein; structural genomics, MCSG., PSI-2, protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp} (A:166-235)
Probab=95.54 E-value=0.0086 Score=37.57 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 33221110678887420145421001112654356413689999998717877
Q gi|254780625|r 145 EPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPI 197 (289)
Q Consensus 145 D~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~ 197 (289)
||| +.+.+.|.+.+..+..+|-.+|. +.|+||.-.++.||+|+|+|...
T Consensus 5 nPl--~~~~e~f~~~l~~~~~~i~Kal~--~~f~GiSPliA~EI~~RAgld~~ 53 (70)
T 3doa_A 5 NPY--DITGAEVLKYIDFNAGNIAKQLL--NQFEGFSPLITNEIVSRRQFMTS 53 (70)
T ss_dssp CGG--GCCHHHHGGGCCGGGCCHHHHHH--HHBTTCCHHHHHHHHTTSSSCST
T ss_pred CCC--CCCHHHHHHHHHCCCCHHHHHHH--HHCCCCCHHHHHHHHHHCCCCCC
T ss_conf 976--58999999987418621999999--87389898999999997399962
No 23
>>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus HB8} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* (A:204-271)
Probab=86.53 E-value=0.83 Score=24.85 Aligned_cols=58 Identities=28% Similarity=0.320 Sum_probs=43.4
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 88874201454210011126543564136899999987178778312222001015899999999878
Q gi|254780625|r 155 YLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQ 222 (289)
Q Consensus 155 ~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~ 222 (289)
.+...+..++++|.+.|. -.+.+.-..+|+|-.++|+|...+-+||-+| +.+|++.+.
T Consensus 8 ~vk~~F~qRRK~L~n~L~----~~~~~k~~~~~~l~~~~i~~~~R~E~Ls~~~------f~~L~~~l~ 65 (68)
T 3fut_A 8 LVEAAFGKRRKTLLNALA----AAGYPKARVEEALRALGLPPRVRAEELDLEA------FRRLREGLE 65 (68)
T ss_dssp HHHHHTSSTTSCHHHHHH----HTTCCHHHHHHHHHHTTCCTTCCGGGCCHHH------HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHCCCCCCCCHHHCCHHH------HHHHHHHHH
T ss_conf 999999873689999987----6358888999999986969554925499999------999999986
No 24
>>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} (A:31-81)
Probab=74.92 E-value=1.7 Score=22.89 Aligned_cols=26 Identities=19% Similarity=0.652 Sum_probs=23.3
Q ss_pred CCCCCCCCEEEEEEECCCCEEECCCCC
Q ss_conf 107877887899998781206387767
Q gi|254780625|r 262 PCLSNCGQMIRRIVQAGRSTFYCTYCQ 288 (289)
Q Consensus 262 ~C~~~CG~~I~~~~~~gR~ty~Cp~CQ 288 (289)
-| |.|+.++++.+-=|-..|||..|-
T Consensus 3 ~C-PdC~~~Lq~LkACGAvdYFC~~~~ 28 (51)
T 2jrp_A 3 LC-PDCRQPLQVLKACGAVDYFCQNGH 28 (51)
T ss_dssp EC-SSSCSCCCEEEETTEEEECCTTTT
T ss_pred EC-CCCCCHHHHHHHCCCHHHHHCCCC
T ss_conf 68-761308999887162235545798
No 25
>>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} (A:302-368)
Probab=70.97 E-value=6.2 Score=19.24 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=37.6
Q ss_pred CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1454210011126543564136899999987178778312222001015899999999878
Q gi|254780625|r 162 KKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQ 222 (289)
Q Consensus 162 ~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~ 222 (289)
.+++.|+++| -..+-.=+..-+|=.|+|+|..++++||.++ +.+|.+.++
T Consensus 17 ~~~k~i~n~l-----~~~lP~rL~~~ll~~~gI~~~~~~~~ls~~~------~~~L~~~lK 66 (67)
T 2i0z_A 17 DPKKGIKNVL-----KGYVPERYFLFLLEKNEIDGSEQAGQVSHEK------IRALVKDFK 66 (67)
T ss_dssp STTSBHHHHT-----TTSSCHHHHHHHHHHTTCCTTSBGGGSCHHH------HHHHHHHHH
T ss_pred CCCHHHHHHH-----HHHHHHHHHHHHHHHCCCCCHHHHHHCCHHH------HHHHHHHHH
T ss_conf 0100122222-----1000245689998750332011231078999------999999875
No 26
>>3fyd_A Probable dimethyladenosine transferase; rossman fold, rRNA methylase, ribosomal assembly, methyltransferase, RNA-binding; 1.75A {Methanocaldococcus jannaschii} PDB: 3fyc_A* (A:179-263)
Probab=68.21 E-value=2.2 Score=22.11 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=44.0
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCCH-------H--HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 678887420145421001112654356413-------6--8999999871787783122220010158999999998788
Q gi|254780625|r 153 AIYLTHQFHKKNSNLKNALLNQKIVAGIGN-------I--YVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQK 223 (289)
Q Consensus 153 ~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN-------~--y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~ 223 (289)
.......+..++.+|.+.|.+ .++..|. . -..|+|-.++|+|...+-+||-+| +.+|++.+..
T Consensus 9 ~~~vr~~F~~RRKtLrn~L~~--~~~~~~~~~~~~~~~~~~~~~~l~~~gid~~~R~E~Ls~~e------f~~La~~l~~ 80 (85)
T 3fyd_A 9 DDFLRAIFQHRNKSVRKALID--SSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKD------IVNLSNEFYR 80 (85)
T ss_dssp HHHHHHHHTTTTSBHHHHHHH--TGGGGTCCHHHHHHHHHHHHTSCHHHHHHHHSBGGGSCHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHH--HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHH------HHHHHHHHHH
T ss_conf 899999986231679999886--64440678899999998535854456555301655499999------9999999999
Q ss_pred HHH
Q ss_conf 767
Q gi|254780625|r 224 VLI 226 (289)
Q Consensus 224 vl~ 226 (289)
.+.
T Consensus 81 ~~~ 83 (85)
T 3fyd_A 81 FLQ 83 (85)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 860
No 27
>>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, antibiotic resistance, methyltransferase; 1.44A {Aquifex aeolicus VF5} PDB: 3ftc_A 3fte_A 3ftf_A* (A:)
Probab=67.55 E-value=4 Score=20.44 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=35.8
Q ss_pred HHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 742014542100111265435641368999999871787783122220010158999999998788
Q gi|254780625|r 158 HQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQK 223 (289)
Q Consensus 158 ~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~ 223 (289)
..+..++.++.+ .+++++|=.++|+|...+.+||.+| +.+|++.+.+
T Consensus 200 ~~F~~rrk~l~~-------------~l~~~~~~~~~i~~~~R~~~l~~~~------~~~L~~~~~~ 246 (249)
T 3ftd_A 200 KIFQNRRKVLRK-------------KIPEELLKEAGINPDARVEQLSLED------FFKLYRLIED 246 (249)
T ss_dssp HHHSSTTSCGGG-------------TSCHHHHHHTTCCTTCCGGGCCHHH------HHHHHHHHHC
T ss_pred HHHHHHHHHHHH-------------HHHHHHHHHCCCCCCCCHHHCCHHH------HHHHHHHHHH
T ss_conf 997631587778-------------7899999986959878936799999------9999999997
No 28
>>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} (A:)
Probab=65.85 E-value=4.2 Score=20.32 Aligned_cols=26 Identities=19% Similarity=0.621 Sum_probs=19.8
Q ss_pred CCCCCCCCCEEEEEEECCCCEEECCCC
Q ss_conf 710787788789999878120638776
Q gi|254780625|r 261 EPCLSNCGQMIRRIVQAGRSTFYCTYC 287 (289)
Q Consensus 261 ~~C~~~CG~~I~~~~~~gR~ty~Cp~C 287 (289)
.-| |.|+.++++.+-=|-..|||.+|
T Consensus 62 a~C-PdC~~~Le~LkACGAvdYFCq~c 87 (101)
T 2jne_A 62 ALC-PDCHQPLQVLKACGAVDYFCQHG 87 (101)
T ss_dssp EEC-TTTCSBCEEEEETTEEEEEETTT
T ss_pred EEC-CCCCCHHHHHHHCCCHHHHHCCC
T ss_conf 768-76131899987626223544579
No 29
>>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Oryza sativa} (M:)
Probab=65.59 E-value=0.52 Score=26.14 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=34.5
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 542100111265435641368999999871787783122220010
Q gi|254780625|r 164 NSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNG 208 (289)
Q Consensus 164 ~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~ 208 (289)
+.+|.-+| +-|=|||-.++..|+-.++|+|. ++.+|+++|.
T Consensus 57 ~K~i~~AL---t~IyGIG~~~A~~Ic~~lGi~~~-k~~~Lt~~qi 97 (145)
T 3bbn_M 57 HKRVEYSL---QYIHGIGRSRSRQILLDLNFDNK-VTKDLSEEEV 97 (145)
T ss_dssp SSBTTTGG---GGSTTCCSSTTTGGGTTTTCCSC-BTTSCCSSTT
T ss_pred CCEEEEEE---EEEECCCHHHHHHHHHHCCCCHH-HHHHCCHHHH
T ss_conf 97889986---53755089999999998698545-4654358899
No 30
>>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} (A:153-193,A:565-659)
Probab=61.64 E-value=8.7 Score=18.29 Aligned_cols=64 Identities=9% Similarity=0.005 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEEEECCCCCCCCCCCCCEEE-EEEECCCC
Q ss_conf 22200101589999999987887676542188755311167787787413316657387710787788789-99987812
Q gi|254780625|r 202 SLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIR-RIVQAGRS 280 (289)
Q Consensus 202 ~Ls~~e~~~~~~~~~L~~~i~~vl~~a~~~gG~~~~~~~~~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~-~~~~~gR~ 280 (289)
.+...+....+.+..++..+.+++.++-...- .......+| |.||..+. +.+.-|-+
T Consensus 57 ~Ia~G~~~~~~fl~~~~~~~~~~v~~~~~~~~---------------------~~~~~~~~C-P~Cg~~~~~r~~~~gcs 114 (136)
T 1i7d_A 57 QISEKQCRYQDFMQPLVGTLYQLIDQAKRTPV---------------------RQFRGIVAP-GSGGSADKKKAAPRKRS 114 (136)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHTSCS---------------------GGGTTCCCC------------------
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHCCCCCC-CCCCCCCCCCCCCCCCC
T ss_conf 99869998999999999999999999985103---------------------331367882-11665534456755355
Q ss_pred EEECCCC
Q ss_conf 0638776
Q gi|254780625|r 281 TFYCTYC 287 (289)
Q Consensus 281 ty~Cp~C 287 (289)
-+=||.|
T Consensus 115 ~~~~~~c 121 (136)
T 1i7d_A 115 AKKSPPA 121 (136)
T ss_dssp -------
T ss_pred CCCCCCC
T ss_conf 4688998
No 31
>>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=60.64 E-value=2.3 Score=22.02 Aligned_cols=11 Identities=27% Similarity=0.920 Sum_probs=8.6
Q ss_pred CCEEECCCCCC
Q ss_conf 12063877679
Q gi|254780625|r 279 RSTFYCTYCQK 289 (289)
Q Consensus 279 R~ty~Cp~CQk 289 (289)
..+|-||.|||
T Consensus 7 g~~yscpvcek 17 (37)
T 2elo_A 7 GRSYSCPVCEK 17 (37)
T ss_dssp CCCCEETTTTE
T ss_pred CCCCCCCCHHH
T ss_conf 86455850231
No 32
>>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} (A:)
Probab=57.76 E-value=5.1 Score=19.78 Aligned_cols=29 Identities=24% Similarity=0.637 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCEEEEEEE-----CCCCEEECCCCC
Q ss_conf 877107877887899998-----781206387767
Q gi|254780625|r 259 TGEPCLSNCGQMIRRIVQ-----AGRSTFYCTYCQ 288 (289)
Q Consensus 259 ~g~~C~~~CG~~I~~~~~-----~gR~ty~Cp~CQ 288 (289)
.+=.| |+|+.+..-..+ -...+|-|-.|+
T Consensus 13 ~~y~C-p~C~~~ys~Lda~~Lld~~~~~F~C~~C~ 46 (62)
T 1vd4_A 13 ASFKC-PVCSSTFTDLEANQLFDPMTGTFRCTFCH 46 (62)
T ss_dssp SEEEC-SSSCCEEEHHHHHHHEETTTTEEBCSSSC
T ss_pred CCEEC-CCCCCEECHHHHHHHCCCCCCEEEECCCC
T ss_conf 72099-89889946766987159789919735899
No 33
>>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* (A:601-677)
Probab=56.87 E-value=4 Score=20.42 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=18.6
Q ss_pred ECCCCCCCCCCC-CCEEEEEEECCC--CEEECCCCC
Q ss_conf 573877107877-887899998781--206387767
Q gi|254780625|r 256 YGKTGEPCLSNC-GQMIRRIVQAGR--STFYCTYCQ 288 (289)
Q Consensus 256 y~r~g~~C~~~C-G~~I~~~~~~gR--~ty~Cp~CQ 288 (289)
|+-.+.-| |.| |.=+..+.++-- -.--||.||
T Consensus 34 fNs~~GrC-p~C~G~G~i~~~m~f~~~v~~~C~~C~ 68 (77)
T 2vf7_A 34 FNVKGGRC-EHCQGEGWVMVELLFLPSVYAPCPVCH 68 (77)
T ss_dssp SSSTTTBC-TTTTTCSEEEETTCSSSCEEEECTTTT
T ss_pred CCCCCCCC-EECCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 14566541-000146620002222122011066650
No 34
>>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Nitrosomonas europaea atcc 19718} (A:1-37)
Probab=56.64 E-value=5.2 Score=19.72 Aligned_cols=26 Identities=23% Similarity=0.618 Sum_probs=20.0
Q ss_pred CCCCCCCCEEEEEEEC--CCCEEECCCCC
Q ss_conf 1078778878999987--81206387767
Q gi|254780625|r 262 PCLSNCGQMIRRIVQA--GRSTFYCTYCQ 288 (289)
Q Consensus 262 ~C~~~CG~~I~~~~~~--gR~ty~Cp~CQ 288 (289)
-| +.||.++....-. .|.-+.||.|+
T Consensus 5 fC-~~CG~~v~~~IP~GD~r~R~VC~~Cg 32 (37)
T 3cng_A 5 FC-SQCGGEVILRIPEGDTLPRYICPKCH 32 (37)
T ss_dssp BC-TTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred EC-CCCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 88-23378561355788860376569999
No 35
>>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} (D:400-454)
Probab=53.93 E-value=13 Score=17.24 Aligned_cols=23 Identities=9% Similarity=-0.100 Sum_probs=17.4
Q ss_pred CCCCCCCCEE-----------EEEEECCCCEEECC
Q ss_conf 1078778878-----------99998781206387
Q gi|254780625|r 262 PCLSNCGQMI-----------RRIVQAGRSTFYCT 285 (289)
Q Consensus 262 ~C~~~CG~~I-----------~~~~~~gR~ty~Cp 285 (289)
-| |+||-+| ....++||+-|||.
T Consensus 4 id-pVCgmpv~~~~~~~~~~~~~~ey~G~~y~FCS 37 (55)
T 1mty_D 4 ID-RVSQVPFCPSLAKGASTLRVHEYNGEMHTFSD 37 (55)
T ss_dssp EC-TTTCCEECTTTCSSCCCCEEEEETTEEEEESS
T ss_pred CC-CCCCCCCCCCCCCCCCCCEEEEECCEEEECCC
T ss_conf 22-01577611257898776413424881662158
No 36
>>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=47.18 E-value=19 Score=16.17 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=39.0
Q ss_pred CCCCCCCHHHHHHHH-HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 543564136899999-98717877831222200101589999999987
Q gi|254780625|r 175 KIVAGIGNIYVCEAL-WRAKLSPIRKTRSLIQNNGTPKDILYKLIQEI 221 (289)
Q Consensus 175 ~~iaGIGN~y~~EiL-f~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i 221 (289)
.-++|||-..+..|+ |+..-.|+.-+.+|..-...+...+++|...+
T Consensus 43 ~~lpgig~~~A~~Ii~~R~~~G~f~siedL~~v~gi~~~~~~~l~~~~ 90 (98)
T 2edu_A 43 RSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHC
T ss_conf 757898999999999999985895889998258898999999999828
No 37
>>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, Zn-binding protein, DNA-binding, transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A (A:)
Probab=45.96 E-value=19 Score=16.05 Aligned_cols=17 Identities=0% Similarity=0.077 Sum_probs=6.3
Q ss_pred HHCCCCCCCEEEECCCC
Q ss_conf 20145421001112654
Q gi|254780625|r 160 FHKKNSNLKNALLNQKI 176 (289)
Q Consensus 160 l~~~~~~Ik~~LlDQ~~ 176 (289)
+..-++.++.+|.|-+.
T Consensus 59 ~~~~~k~v~~~~~~~~~ 75 (78)
T 3ga8_A 59 VKAFRASVNAETVAPEF 75 (78)
T ss_dssp HHHHHHHHHHC------
T ss_pred HHHHHHHHCCCCCCHHH
T ss_conf 99999985152468166
No 38
>>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- tRNA synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* (A:31-242,A:390-455)
Probab=44.88 E-value=15 Score=16.68 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=13.4
Q ss_pred ECCCCCCCCCCCCCEEEEE
Q ss_conf 5738771078778878999
Q gi|254780625|r 256 YGKTGEPCLSNCGQMIRRI 274 (289)
Q Consensus 256 y~r~g~~C~~~CG~~I~~~ 274 (289)
+-..|.+| |+||.++...
T Consensus 209 ~~~~g~~~-~~~~~~~~~~ 226 (278)
T 2j3l_A 209 LYTPGDPS-PDGNGVLAFT 226 (278)
T ss_dssp CCCCTCBC-TTSSSBEEEE
T ss_pred CCCCCCCC-CCCCCEEEEE
T ss_conf 47865667-7788546774
No 39
>>2inp_A Phenol hydroxylase component PHN; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_A (A:398-442)
Probab=41.78 E-value=15 Score=16.74 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=16.7
Q ss_pred CCCCCEE---E-----EEEECCCCEEECCC
Q ss_conf 8778878---9-----99987812063877
Q gi|254780625|r 265 SNCGQMI---R-----RIVQAGRSTFYCTY 286 (289)
Q Consensus 265 ~~CG~~I---~-----~~~~~gR~ty~Cp~ 286 (289)
|+||..| . .....||+-|||..
T Consensus 3 PVCGM~v~~~~~~~~~~~~~~G~~Y~FCS~ 32 (45)
T 2inp_A 3 PTIFTEKDAPTMLSHRQIEHEGERYHFCSD 32 (45)
T ss_dssp BSCCEETTEEEEECCEEEEETTEEEEESSH
T ss_pred CCCCCCCCCCCCCCCHHEEECCCEEECCCH
T ss_conf 741278888553333000108846500574
No 40
>>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} (C:1-162)
Probab=40.92 E-value=10 Score=17.85 Aligned_cols=15 Identities=0% Similarity=0.200 Sum_probs=8.9
Q ss_pred CCEEEEEEECCCCCE
Q ss_conf 633899970688760
Q gi|254780625|r 96 HNHVTISLTNNTNTK 110 (289)
Q Consensus 96 ~~~~~~~~~~~~~~~ 110 (289)
...+.+.+.|++...
T Consensus 78 ~y~l~~~i~D~Tg~~ 92 (162)
T 1l1o_C 78 RMILSVNIADFQENQ 92 (162)
T ss_dssp EEEEEEEEECSSCEE
T ss_pred EEEEEEEEECCCCCE
T ss_conf 999999998089969
No 41
>>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} (B:1-61)
Probab=40.29 E-value=3 Score=21.29 Aligned_cols=25 Identities=20% Similarity=0.533 Sum_probs=20.0
Q ss_pred CCCCCCCCEEEEEEECCCCEEECCCCC
Q ss_conf 107877887899998781206387767
Q gi|254780625|r 262 PCLSNCGQMIRRIVQAGRSTFYCTYCQ 288 (289)
Q Consensus 262 ~C~~~CG~~I~~~~~~gR~ty~Cp~CQ 288 (289)
.| |.||..|-+..+. +..|.||.|-
T Consensus 32 KC-p~C~~~~~~k~l~-~n~~VCp~Cg 56 (61)
T 2f9i_B 32 KC-PKCKKIMYTKELA-ENLNVCFNCD 56 (61)
T ss_dssp EC-TTTCCEEEHHHHH-HTTTBCTTTC
T ss_pred EC-CCCCCEEEHHHHH-HHCCCCCCCC
T ss_conf 58-8987402499999-8488784998
No 42
>>3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm, NAD, structural genomics; HET: NDP NDB EPE; 2.14A {Salmonella enterica subsp} (A:1-95,A:281-315)
Probab=39.97 E-value=13 Score=17.16 Aligned_cols=55 Identities=13% Similarity=0.033 Sum_probs=47.3
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1112654356413689999998717877831222200101589999999987887
Q gi|254780625|r 170 ALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKV 224 (289)
Q Consensus 170 ~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~v 224 (289)
+=+=|++=|||=.+++++.|-.+.|-|.-++-.|.|.++.+.....-+.++|++.
T Consensus 60 Lk~I~slgAGVD~Ll~~~~l~~~~LP~~vPivRlvDa~t~~~~a~~~ia~nirr~ 114 (130)
T 3kbo_A 60 LKAVFVLGAGVDAILSKLNAHPEXLDASIPLFRLEDAVTRPAEAIDYISRTITQL 114 (130)
T ss_dssp CSEEEESSSCCHHHHTTTTTCGGGSCTTSCEECCCCCCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7399879986754567889648966514444223314879999999999999999
No 43
>>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} (A:194-301,A:369-391)
Probab=39.00 E-value=25 Score=15.37 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=38.6
Q ss_pred HHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEE-----ECCEEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 9986797788999648332657877899972898899996-----053089995035531001525532799
Q gi|254780625|r 15 MMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVS-----RRAKYLLIELEGNLSIIVHLGMSGSFI 81 (289)
Q Consensus 15 ~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~-----r~GK~l~l~l~~~~~L~~HlgM~G~~~ 81 (289)
.+.+ |++|+...-.--.+....+....+.|.|-.+..|. ..||-+.-+. +..|..|.|++|--.
T Consensus 12 a~~l-GH~I~~~~PaLvpl~~~~~~~~l~~L~Gv~lk~v~~~~~~~~~k~~~~~~--GelLFTh~GlSGpaI 80 (131)
T 2i0z_A 12 AEKA-GHTITELFPTEVPILSNEPFIRDRSLQGLALRDINLSVLNPKGKAIISHK--MDMLFTHFGLSGPAA 80 (131)
T ss_dssp HHHT-TCCEEEEEECSCCEECCCHHHHTTTTTTCEEEEEEEEECC----CEEEEE--EEEEECSSEEESHHH
T ss_pred HHCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
T ss_conf 1113-54422122224554446541123443323311000010122344332235--764310012478763
No 44
>>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-47)
Probab=38.95 E-value=8 Score=18.53 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=25.4
Q ss_pred ECCCCCCCCCCCCCEEEEEEECCCCEEECCCC
Q ss_conf 57387710787788789999878120638776
Q gi|254780625|r 256 YGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYC 287 (289)
Q Consensus 256 y~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~C 287 (289)
|.+.+..| ..|+.+|.-..+....-.|.|.|
T Consensus 11 y~~~~~~C-~~C~~~I~g~~v~A~~~~~H~~C 41 (47)
T 2dlo_A 11 YVATLEKC-ATCSQPILDRILRAMGKAYHPGC 41 (47)
T ss_dssp CCSSCCBC-TTTCCBCCSCCEEETTEEECTTT
T ss_pred HHCCCHHH-HCCCCEECCCEEEECCCCCCCCC
T ss_conf 60428135-70899701318898992244045
No 45
>>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} (A:266-353)
Probab=37.55 E-value=13 Score=17.08 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=32.9
Q ss_pred HHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 742014542100111265435641368999999871787---78312222001015899999999878
Q gi|254780625|r 158 HQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSP---IRKTRSLIQNNGTPKDILYKLIQEIQ 222 (289)
Q Consensus 158 ~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P---~~~~~~Ls~~e~~~~~~~~~L~~~i~ 222 (289)
..+..++.+|++.| .++.+| +.+.|..+.++| .+...+||.+| +.+|.++..
T Consensus 12 ~~F~qRRK~L~nsL--~~L~pg-----a~~~l~~~~~~~~~~~kRpe~Ltvee------f~~La~~~~ 66 (88)
T 1i4w_A 12 HLMILKRTPLNTVM--DSLGHG-----GQQYFNSRITDKDLLKKCPIDLTNDE------FIYLTKLFM 66 (88)
T ss_dssp HHHTTTTSCTTTGG--GGSSTT-----HHHHHTTTCCCCTTTSSCGGGCCHHH------HHHHHHHHH
T ss_pred HHHHHHCCCHHHHH--HHHCCC-----HHHHHHCCCCCHHHHHCCCCCCCCCH------HHHHHHHHH
T ss_conf 75543137527777--652355-----16665233652768860996666623------567889986
No 46
>>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} (A:316-426)
Probab=36.77 E-value=16 Score=16.51 Aligned_cols=21 Identities=24% Similarity=0.638 Sum_probs=15.6
Q ss_pred CCCCCCCCCEEEEEEECCCCEEECCC
Q ss_conf 71078778878999987812063877
Q gi|254780625|r 261 EPCLSNCGQMIRRIVQAGRSTFYCTY 286 (289)
Q Consensus 261 ~~C~~~CG~~I~~~~~~gR~ty~Cp~ 286 (289)
..| |.||+.+.+.. ..+||++
T Consensus 89 ~~C-P~C~s~l~~~~----~~~~C~N 109 (111)
T 1dgs_A 89 EAC-PECGHRLVKEG----KVHRCPN 109 (111)
T ss_dssp SBC-TTTCCBCEEET----TEEECCC
T ss_pred CCC-CCCCCEEEECC----CEEEECC
T ss_conf 989-99899801046----2589689
No 47
>>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} (A:1-65)
Probab=36.45 E-value=17 Score=16.42 Aligned_cols=27 Identities=30% Similarity=0.736 Sum_probs=19.1
Q ss_pred CCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf 71078778878999987812063877679
Q gi|254780625|r 261 EPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 261 ~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289)
.|| |+||..=.-..+.. ...||=.||+
T Consensus 15 ~pC-pnCGSSDa~s~YsD-Gh~~CF~C~~ 41 (65)
T 1nui_A 15 IPC-DNCGSSDGNSLFSD-GHTFCYVCEK 41 (65)
T ss_dssp ECC-SSSCCSSCEEEETT-SCEEETTTCC
T ss_pred CCC-CCCCCCCCCEEECC-CCEEECCCCC
T ss_conf 899-98979999879539-9889788998
No 48
>>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, nucleotide excision repair, peptide:N-glycanase; 1.85A {Mus musculus} (A:75-142)
Probab=35.82 E-value=11 Score=17.69 Aligned_cols=27 Identities=37% Similarity=0.712 Sum_probs=14.4
Q ss_pred CCCCCCCCCEEEEEEEC------------CCC-EEECCCCC
Q ss_conf 71078778878999987------------812-06387767
Q gi|254780625|r 261 EPCLSNCGQMIRRIVQA------------GRS-TFYCTYCQ 288 (289)
Q Consensus 261 ~~C~~~CG~~I~~~~~~------------gR~-ty~Cp~CQ 288 (289)
-+| +.||.......-+ +|. .|.|..|+
T Consensus 8 P~C-~~Cg~~t~~~~~~~~pt~~E~~~ga~rVE~y~C~~C~ 47 (68)
T 2f4m_A 8 IVC-SKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQ 47 (68)
T ss_dssp CCC-TTTCCCCEECSSCBCCCSHHHHTTCCCEEEEEETTTT
T ss_pred CCC-CCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCC
T ss_conf 886-5468865025878898967853688568999758888
No 49
>>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (B:1155-1224)
Probab=34.91 E-value=20 Score=15.91 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=14.2
Q ss_pred CCCCCCCCEEEEEEECCCCEEECCCCC
Q ss_conf 107877887899998781206387767
Q gi|254780625|r 262 PCLSNCGQMIRRIVQAGRSTFYCTYCQ 288 (289)
Q Consensus 262 ~C~~~CG~~I~~~~~~gR~ty~Cp~CQ 288 (289)
.| +.||....... .....+||+.|.
T Consensus 8 VC-~~CG~i~~~~~-~~~~~~~C~~C~ 32 (70)
T 1twf_B 8 IC-GICGLMTVIAK-LNHNQFECKGCD 32 (70)
T ss_dssp EE-SSSCSSCCEEE-TTTTEEEBTTTT
T ss_pred EC-CCCCCEEEEEC-CCCCCEEECCCC
T ss_conf 00-37774688741-443631705777
No 50
>>1qyr_A KSGA, high level kasugamycin resistance protein, S-; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} (A:)
Probab=34.60 E-value=25 Score=15.37 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 356413689999998717877831222200101589999999987887
Q gi|254780625|r 177 VAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKV 224 (289)
Q Consensus 177 iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~v 224 (289)
.++..+.+-.++|=.++|.|..++.+|+..| +.+|++.+++.
T Consensus 210 ~~~l~~~~~~~~l~~~~i~~~~r~~~l~~~~------~~~l~~~~~~~ 251 (252)
T 1qyr_A 210 RNSLGNLFSVEVLTGMGIDPAMRAENISVAQ------YCQMANYLAEN 251 (252)
T ss_dssp HHHTTTTCCHHHHHHTTCCTTSBGGGSCHHH------HHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHCCCCCCCCHHHCCHHH------HHHHHHHHHHH
T ss_conf 9987504409999977988334932299999------99999999840
No 51
>>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} (A:1-62)
Probab=33.31 E-value=13 Score=17.22 Aligned_cols=24 Identities=21% Similarity=0.659 Sum_probs=17.6
Q ss_pred CCCCCCCCCEEEEEEECCCCEEECCCCC
Q ss_conf 7107877887899998781206387767
Q gi|254780625|r 261 EPCLSNCGQMIRRIVQAGRSTFYCTYCQ 288 (289)
Q Consensus 261 ~~C~~~CG~~I~~~~~~gR~ty~Cp~CQ 288 (289)
-+| |.|+.. -++-....|.||.|.
T Consensus 28 P~C-PkC~Se---YTYeDg~l~VCPECg 51 (62)
T 2akl_A 28 PPC-PQCNSE---YTYEDGALLVCPECA 51 (62)
T ss_dssp CCC-TTTCCC---CCEECSSSEEETTTT
T ss_pred CCC-CCCCCC---CEECCCCEEECCCCC
T ss_conf 889-888991---328379988998763
No 52
>>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} (A:281-361)
Probab=32.90 E-value=15 Score=16.71 Aligned_cols=18 Identities=6% Similarity=-0.123 Sum_probs=12.2
Q ss_pred EEEEECCCCEEECCCCCC
Q ss_conf 999987812063877679
Q gi|254780625|r 272 RRIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 272 ~~~~~~gR~ty~Cp~CQk 289 (289)
+.+.+.|-..|+|++|++
T Consensus 51 ~~E~L~~~n~y~C~~C~~ 68 (81)
T 2f1z_A 51 AVEQLDGDNKYDAGEHGL 68 (81)
T ss_dssp CEEEECTTSCBCCGGGCS
T ss_pred CHHHHCCCCEEECCCCCC
T ss_conf 543420000020224653
No 53
>>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} (A:499-568)
Probab=32.76 E-value=31 Score=14.74 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=29.3
Q ss_pred CCCCCCCHHHHHHHH-HHHHCCCCCCCCCCCHHHHHH
Q ss_conf 543564136899999-987178778312222001015
Q gi|254780625|r 175 KIVAGIGNIYVCEAL-WRAKLSPIRKTRSLIQNNGTP 210 (289)
Q Consensus 175 ~~iaGIGN~y~~EiL-f~a~I~P~~~~~~Ls~~e~~~ 210 (289)
+.++|||..++..|+ |+..-.|+....+|..-...+
T Consensus 13 ~~lpgig~~~A~~Ii~~R~~~G~f~s~~dL~~v~gl~ 49 (70)
T 3bzc_A 13 ARISGLNSTLAQNIVAHRDANGAFRTRDELKKVSRLG 49 (70)
T ss_dssp HTSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCC
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCC
T ss_conf 6606978899999999999669957799998567888
No 54
>>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:715-792)
Probab=32.56 E-value=31 Score=14.72 Aligned_cols=32 Identities=25% Similarity=0.589 Sum_probs=18.9
Q ss_pred ECCCCCCCCCCC-CCEEEEEEEC--CCCEEECCCCC
Q ss_conf 573877107877-8878999987--81206387767
Q gi|254780625|r 256 YGKTGEPCLSNC-GQMIRRIVQA--GRSTFYCTYCQ 288 (289)
Q Consensus 256 y~r~g~~C~~~C-G~~I~~~~~~--gR~ty~Cp~CQ 288 (289)
|+-++-.| |.| |.=+..+..+ .-..--||.||
T Consensus 35 fNs~~G~C-~~C~G~G~i~~~~~f~~~~~~~C~~C~ 69 (78)
T 2r6f_A 35 FNVKGGRC-EACHGDGIIKIEXHFLPDVYVPCEVCH 69 (78)
T ss_dssp TTSTTTBC-TTTTTCSEEEECCSSSCCEEEECTTTT
T ss_pred CCCCCCCE-ECCCCCCEEECCHHHCCCCCCCCHHCC
T ss_conf 12455410-101376245134121244343331005
No 55
>>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} (A:)
Probab=32.38 E-value=18 Score=16.22 Aligned_cols=26 Identities=27% Similarity=0.623 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCEEEEEEECCCCEEECCCC
Q ss_conf 87710787788789999878120638776
Q gi|254780625|r 259 TGEPCLSNCGQMIRRIVQAGRSTFYCTYC 287 (289)
Q Consensus 259 ~g~~C~~~CG~~I~~~~~~gR~ty~Cp~C 287 (289)
....| |+||.-+-.....+| +||-+|
T Consensus 17 lrk~C-p~Cg~GvfmA~H~dR--~~CGKC 42 (55)
T 2k4x_A 17 KHRFC-PRCGPGVFLAEHADR--YSCGRC 42 (55)
T ss_dssp SSCCC-TTTTTTCCCEECSSE--EECTTT
T ss_pred ECCCC-CCCCCCEEEEECCCC--CCCCCC
T ss_conf 35759-699994774125997--764476
No 56
>>2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli K12} (A:318-477)
Probab=32.09 E-value=26 Score=15.24 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=6.0
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 35641368999999871
Q gi|254780625|r 177 VAGIGNIYVCEALWRAK 193 (289)
Q Consensus 177 iaGIGN~y~~EiLf~a~ 193 (289)
|-|+|.-.- +.||++|
T Consensus 134 I~glG~~~i-~~L~~~g 149 (160)
T 2owo_A 134 VDGMGDKII-DQLVEKE 149 (160)
T ss_dssp CTTCCHHHH-HHHHHTT
T ss_pred CCCCCHHHH-HHHHHHC
T ss_conf 666136788-8877640
No 57
>>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} (A:896-917)
Probab=32.00 E-value=8.1 Score=18.47 Aligned_cols=10 Identities=40% Similarity=0.859 Sum_probs=6.7
Q ss_pred CEEECCCCCC
Q ss_conf 2063877679
Q gi|254780625|r 280 STFYCTYCQK 289 (289)
Q Consensus 280 ~ty~Cp~CQk 289 (289)
-|..||.||.
T Consensus 7 lthlcprcqq 16 (22)
T 1ffy_A 7 LTHLCPRCQQ 16 (22)
T ss_dssp EEEECHHHHH
T ss_pred CCCCCHHHHH
T ss_conf 8876866899
No 58
>>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} (A:112-192)
Probab=31.10 E-value=21 Score=15.78 Aligned_cols=17 Identities=6% Similarity=-0.119 Sum_probs=9.4
Q ss_pred EEEECCCCEEECCCCCC
Q ss_conf 99987812063877679
Q gi|254780625|r 273 RIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 273 ~~~~~gR~ty~Cp~CQk 289 (289)
.+.+.|-..|+|++|++
T Consensus 52 ~E~L~g~n~y~Ce~C~~ 68 (81)
T 1nb8_A 52 VEQLDGDNKYDAGEHGL 68 (81)
T ss_dssp CEEECTTTCEECGGGCE
T ss_pred HHEECCCCCCCCCCCCC
T ss_conf 30032542113554541
No 59
>>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A (A:1-128,A:399-543)
Probab=30.27 E-value=27 Score=15.12 Aligned_cols=13 Identities=15% Similarity=0.064 Sum_probs=6.3
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 1110678887420
Q gi|254780625|r 149 NSFNAIYLTHQFH 161 (289)
Q Consensus 149 ~~~~~~~~~~~l~ 161 (289)
..||.+.+...+.
T Consensus 249 ~~~D~ea~~~lla 261 (273)
T 2nut_A 249 ASFDQEAAAILMA 261 (273)
T ss_dssp HTBCHHHHHHHHH
T ss_pred HHCCHHHHHHHHH
T ss_conf 7429999999999
No 60
>>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori} (A:)
Probab=29.84 E-value=22 Score=15.69 Aligned_cols=23 Identities=17% Similarity=0.635 Sum_probs=11.1
Q ss_pred CCCCCCCCEEEEEEECCCCEEECCCCC
Q ss_conf 107877887899998781206387767
Q gi|254780625|r 262 PCLSNCGQMIRRIVQAGRSTFYCTYCQ 288 (289)
Q Consensus 262 ~C~~~CG~~I~~~~~~gR~ty~Cp~CQ 288 (289)
.| +.||..-. +..-..+.||.|+
T Consensus 75 ~C-~~Cg~~~~---~~~~~~~~CP~Cg 97 (119)
T 2kdx_A 75 EC-KDCSHVFK---PNALDYGVCEKCH 97 (119)
T ss_dssp EC-SSSSCEEC---SCCSTTCCCSSSS
T ss_pred EC-CCCCCEEC---CCCCCCCCCCCCC
T ss_conf 97-78998853---4775177490978
No 61
>>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus HB8} (A:)
Probab=28.91 E-value=36 Score=14.33 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=28.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 54356413689999998717877831222200101589999999
Q gi|254780625|r 175 KIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLI 218 (289)
Q Consensus 175 ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~ 218 (289)
..++|||-.+++.|+ .--|+....+|-+-.+.+...+++|-
T Consensus 30 ~~lpGig~~~A~~Ii---~~R~f~s~~dL~~v~gl~~~~~~~l~ 70 (75)
T 2duy_A 30 XALPGIGPVLARRIV---EGRPYARVEDLLKVKGIGPATLERLR 70 (75)
T ss_dssp TTSTTCCHHHHHHHH---HTCCCSSGGGGGGSTTCCHHHHHHHG
T ss_pred HHCCCCCHHHHHHHH---HCCCCCCHHHHHHCCCCCHHHHHHHH
T ss_conf 777898999999999---86898989999618898999999998
No 62
>>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B (A:1-154,A:400-596,A:723-751)
Probab=28.14 E-value=18 Score=16.19 Aligned_cols=16 Identities=6% Similarity=0.185 Sum_probs=6.4
Q ss_pred EEEEECCCCCCCEECC
Q ss_conf 9998158766410014
Q gi|254780625|r 113 RVIYNDPRRFGFMDLV 128 (289)
Q Consensus 113 ~l~~~D~R~fG~~~~~ 128 (289)
.+.|.+...--.++++
T Consensus 219 a~lYT~~~G~rriRV~ 234 (380)
T 3eh1_A 219 ALLYTSSKGERRIRVH 234 (380)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEECCCCCEEEEEE
T ss_conf 8999858997899999
No 63
>>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} (B:106-297,B:551-753,B:914-926)
Probab=27.85 E-value=29 Score=14.88 Aligned_cols=16 Identities=6% Similarity=0.065 Sum_probs=5.9
Q ss_pred EEEEECCCCCCCEECC
Q ss_conf 9998158766410014
Q gi|254780625|r 113 RVIYNDPRRFGFMDLV 128 (289)
Q Consensus 113 ~l~~~D~R~fG~~~~~ 128 (289)
.+.|.+...--+++++
T Consensus 256 allYT~~~G~RriRV~ 271 (408)
T 1m2v_B 256 AVLLSLNNSQRRIRII 271 (408)
T ss_dssp EEEEEETTTEEEEEEE
T ss_pred EEEEECCCCCEEEEEE
T ss_conf 9999828986899998
No 64
>>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-42)
Probab=27.53 E-value=18 Score=16.29 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCEEECCCC
Q ss_conf 387710787788789999878120638776
Q gi|254780625|r 258 KTGEPCLSNCGQMIRRIVQAGRSTFYCTYC 287 (289)
Q Consensus 258 r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~C 287 (289)
+.+..| ..|+.+|.-..+....-.|.|.|
T Consensus 3 ~~~~~C-~~C~~~I~g~~i~al~~~wH~~C 31 (42)
T 2d8z_A 3 SGSSGC-VQCKKPITTGGVTYREQPWHKEC 31 (42)
T ss_dssp CCCCBC-SSSCCBCCSSEEESSSSEEETTT
T ss_pred CCCCCC-CCCCCEECCCEEEECCCEECCCC
T ss_conf 888524-14799917989999984113534
No 65
>>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} (A:635-702)
Probab=26.92 E-value=31 Score=14.78 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=14.6
Q ss_pred CCCCCHHHHHHHHHHHHCCC
Q ss_conf 35641368999999871787
Q gi|254780625|r 177 VAGIGNIYVCEALWRAKLSP 196 (289)
Q Consensus 177 iaGIGN~y~~EiLf~a~I~P 196 (289)
++|||- .++-.||.|||.-
T Consensus 3 i~gVGR-~RAR~Ly~aGiks 21 (68)
T 2p6r_A 3 IRHIGR-VRARKLYNAGIRN 21 (68)
T ss_dssp STTCCH-HHHHHHHTTTCCS
T ss_pred CCCCCH-HHHHHHHHCCCCC
T ss_conf 899999-9999999879999
No 66
>>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} (A:72-121)
Probab=25.54 E-value=41 Score=13.94 Aligned_cols=13 Identities=23% Similarity=0.759 Sum_probs=7.3
Q ss_pred CCCCCCCCCCEEEE
Q ss_conf 77107877887899
Q gi|254780625|r 260 GEPCLSNCGQMIRR 273 (289)
Q Consensus 260 g~~C~~~CG~~I~~ 273 (289)
-..| |.||++..-
T Consensus 32 ~~~C-PkCgs~l~i 44 (50)
T 3ir9_A 32 AGNC-PKCGSSLEV 44 (50)
T ss_dssp CCBC-TTTCCBEEE
T ss_pred CCCC-CCCCCCHHH
T ss_conf 4568-555630221
No 67
>>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} (A:)
Probab=25.37 E-value=21 Score=15.84 Aligned_cols=10 Identities=50% Similarity=0.786 Sum_probs=4.3
Q ss_pred CCEEEEEEEC
Q ss_conf 5308999503
Q gi|254780625|r 56 RAKYLLIELE 65 (289)
Q Consensus 56 ~GK~l~l~l~ 65 (289)
.+|.+++.|-
T Consensus 23 ~~~~vvi~f~ 32 (120)
T 1mek_A 23 AHKYLLVEFY 32 (120)
T ss_dssp HCSEEEEEEE
T ss_pred CCCCEEEEEE
T ss_conf 6997999998
No 68
>>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} (A:)
Probab=25.16 E-value=30 Score=14.79 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=8.8
Q ss_pred CCCCCCCCCCEEEEEEECCCC
Q ss_conf 771078778878999987812
Q gi|254780625|r 260 GEPCLSNCGQMIRRIVQAGRS 280 (289)
Q Consensus 260 g~~C~~~CG~~I~~~~~~gR~ 280 (289)
+++| |.|++.++-..-.|.+
T Consensus 110 ~k~C-pnC~g~L~~~~Crgh~ 129 (174)
T 1odh_A 110 RKSC-PNCNGPLKLIPCRGHG 129 (174)
T ss_dssp HSBC-SSSCCBEEEECCCTBT
T ss_pred CCCC-CCCCCCEEEEECCCCC
T ss_conf 5899-8998715777636756
No 69
>>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} (A:207-268)
Probab=24.44 E-value=28 Score=15.07 Aligned_cols=26 Identities=15% Similarity=0.442 Sum_probs=13.3
Q ss_pred CCCCCCCCCEE----EEEEEC--C---CCEEECCCC
Q ss_conf 71078778878----999987--8---120638776
Q gi|254780625|r 261 EPCLSNCGQMI----RRIVQA--G---RSTFYCTYC 287 (289)
Q Consensus 261 ~~C~~~CG~~I----~~~~~~--g---R~ty~Cp~C 287 (289)
..| |.||... ....+- + =+++.|++|
T Consensus 15 ~~C-p~C~~~~~~~~~~~~IPyF~evii~s~~C~~C 49 (62)
T 2qkd_A 15 TNC-PECNAPAQTNMKLVQIPHFKEVIIMATNCENC 49 (62)
T ss_dssp ECC-TTTCCTTCEEEEEECCTTSCCEEEEEEECSSS
T ss_pred CCC-CCCCCCCEEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 889-88887233689997268764289999765766
No 70
>>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:1-56)
Probab=23.56 E-value=26 Score=15.21 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=23.9
Q ss_pred EEC-CCCCCCCCCCCCEEEEEEECCCCEEECCCC
Q ss_conf 657-387710787788789999878120638776
Q gi|254780625|r 255 VYG-KTGEPCLSNCGQMIRRIVQAGRSTFYCTYC 287 (289)
Q Consensus 255 vy~-r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~C 287 (289)
-|. +.+..| ..|+.+|.-..+-...-.|.|.|
T Consensus 19 ~~~~~~~~~C-~~C~~~I~g~~v~Alg~~~HpeC 51 (56)
T 2dar_A 19 IPAGKRTPMC-AHCNQVIRGPFLVALGKSWHPEE 51 (56)
T ss_dssp ECTTTCCCBB-SSSCCBCCSCEEEETTEEECTTT
T ss_pred CCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCC
T ss_conf 8989989301-46989832554798986143688
No 71
>>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio fischeri ES114} (A:1-63,A:152-185)
Probab=23.52 E-value=11 Score=17.73 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=4.0
Q ss_pred CCEEEECCCC
Q ss_conf 1001112654
Q gi|254780625|r 167 LKNALLNQKI 176 (289)
Q Consensus 167 Ik~~LlDQ~~ 176 (289)
+-+++.|-+.
T Consensus 65 vPafiVngkY 74 (97)
T 3feu_A 65 VPTFVVNGKY 74 (97)
T ss_dssp SSEEEETTTE
T ss_pred CCEEEECCEE
T ss_conf 8689997989
No 72
>>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} (A:366-459)
Probab=21.76 E-value=26 Score=15.24 Aligned_cols=21 Identities=10% Similarity=0.010 Sum_probs=15.8
Q ss_pred CCCCCEE-------EEEEECCCCEEECC
Q ss_conf 8778878-------99998781206387
Q gi|254780625|r 265 SNCGQMI-------RRIVQAGRSTFYCT 285 (289)
Q Consensus 265 ~~CG~~I-------~~~~~~gR~ty~Cp 285 (289)
|+||..| .....+|++-|||.
T Consensus 37 PVcgm~v~~~~~~~~~~~~~G~~y~FCS 64 (94)
T 2inc_A 37 PIAHTPGNKWNVKDYQLEYEGRLYHFGS 64 (94)
T ss_dssp BCBCCCGGGCCCCCCCEEETTEEECCSS
T ss_pred CCCCCCCCCCCCCCEEEEECCEEEECCC
T ss_conf 6221788776432013567782540057
No 73
>>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:1-30)
Probab=21.71 E-value=26 Score=15.23 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCEEE
Q ss_conf 387710787788789
Q gi|254780625|r 258 KTGEPCLSNCGQMIR 272 (289)
Q Consensus 258 r~g~~C~~~CG~~I~ 272 (289)
-.|.||+..||.-|.
T Consensus 2 ~~~APcC~~CgeFii 16 (30)
T 2d8x_A 2 SSGSSGCHQCGEFII 16 (30)
T ss_dssp CCCSSBCSSSCCBCC
T ss_pred CCCCCCCHHCCCEEC
T ss_conf 888860041899832
No 74
>>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} (A:127-250)
Probab=21.32 E-value=48 Score=13.51 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=10.9
Q ss_pred EEEECCCCEEECCCCCC
Q ss_conf 99987812063877679
Q gi|254780625|r 273 RIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 273 ~~~~~gR~ty~Cp~CQk 289 (289)
.+.+.+...|+|+.|++
T Consensus 92 ~e~l~~~~~y~C~~C~~ 108 (124)
T 3i3t_A 92 EEELESENAPVCDRCRQ 108 (124)
T ss_dssp CEEECGGGCCCCSSSCC
T ss_pred HHHHHHHCCCCCCCCCC
T ss_conf 54322101200034576
No 75
>>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} (A:1-117,A:393-626,A:735-768)
Probab=21.14 E-value=35 Score=14.44 Aligned_cols=18 Identities=6% Similarity=0.170 Sum_probs=8.0
Q ss_pred EEEEEECCCCCCCEECCC
Q ss_conf 899981587664100145
Q gi|254780625|r 112 YRVIYNDPRRFGFMDLVE 129 (289)
Q Consensus 112 ~~l~~~D~R~fG~~~~~~ 129 (289)
..+.|.++..--.+++..
T Consensus 214 ~allYt~~~G~rriRV~T 231 (385)
T 1m2o_A 214 FITTYQHSSGTNRIRVTT 231 (385)
T ss_dssp EEEEEEETTTEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEE
T ss_conf 999998699868999997
No 76
>>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (B:1143-1210)
Probab=20.53 E-value=29 Score=14.90 Aligned_cols=10 Identities=30% Similarity=1.022 Sum_probs=4.6
Q ss_pred CCEEECCCCC
Q ss_conf 1206387767
Q gi|254780625|r 279 RSTFYCTYCQ 288 (289)
Q Consensus 279 R~ty~Cp~CQ 288 (289)
+..+||+.|+
T Consensus 23 ~~~~~C~~C~ 32 (68)
T 3h0g_B 23 KDSYECRSCQ 32 (68)
T ss_dssp SCCCCCTTTC
T ss_pred CCCEECCCCC
T ss_conf 6855656023
Done!