HHsearch results for GI: 254780625 and protein with PDBid: 1k3x_A

>1k3x_A Endonuclease VIII; hydrolase/DNA; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=100.00  E-value=0  Score=489.81  Aligned_cols=259  Identities=22%  Similarity=0.426  Sum_probs=223.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf             67643678898899986797788999648332657877899972898899996053089995035531001525532799
Q gi|254780625|r    2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSFI   81 (289)
Q Consensus         2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~~   81 (289)
                      |||||||++++.|++.+.|++|++|.+..+..     +.+.+.|.|++|++|+|+||||+|+||++.+|++||||+|+|+
T Consensus         1 PElPEVe~~~~~L~~~~~g~~I~~v~~~~~~~-----~~~~~~L~G~~i~~v~RrGK~l~~~l~~~~~L~~HLgMtG~~~   75 (262)
T 1k3x_A            1 PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQL-----KTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWR   75 (262)
T ss_dssp             CCHHHHHHHHHHHHHHHBTCCCSEEEESSGGG-----TTHHHHHTTCCEEEEEEETTEEEEEETTSCEEEEECTTTCEEE
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEEEECCCCH-----HHHHHHCCCCEEEEEEECEEEEEECCCCCEEEEECCCCCEEEE
T ss_conf             97489999999999986898898999889855-----6589776998998999651388360478439997155433788


Q ss_pred             EECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             81478542245876633899970688760489998158766410014553010053235655533221110678887420
Q gi|254780625|r   82 IEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFH  161 (289)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~lGpD~l~~~~~~~~~~~~l~  161 (289)
                      +...+.    .+.++.++.+.+.++..   ..+.|.|.    .+.++.......++.+++||||||+++|+.+.|.+.+.
T Consensus        76 ~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~l~~lGpD~l~~~~~~~~~~~~l~  144 (262)
T 1k3x_A           76 VVDTGE----EPQTTRVLRVKLQTADK---TILLYSAS----DIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLL  144 (262)
T ss_dssp             EEETTC----CCCCSSCEEEEEECSSE---EEEEESCC----EEEEECTTHHHHSHHHHHCCCBTTCTTCCHHHHHHHHH
T ss_pred             EECCCC----CCCCCEEEEEECCCCCE---EEEEECCC----EEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             731434----55432034443056866---99997352----05995242300024898669987984776999999987


Q ss_pred             C---CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             1---4542100111265435641368999999871787783122220010158999999998788767654218875531
Q gi|254780625|r  162 K---KNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRD  238 (289)
Q Consensus       162 ~---~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~vl~~a~~~gG~~~~~  238 (289)
                      .   ++++||++||||++||||||||+|||||+|||||++++++||++|      +.+|+++++.||..|++.+|++..+
T Consensus       145 ~~k~~~~~Ik~~LlDQ~~iaGIGNiya~EiLf~a~I~P~~~~~~Ls~~~------~~~L~~~i~~vl~~a~~~~g~~~~~  218 (262)
T 1k3x_A          145 SPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQ------LDALAHALLEIPRFSYATRGQVDEN  218 (262)
T ss_dssp             STTTTTSCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHH------HHHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH------HHHHHHHHHHHHHHHHHCCCEECCC
T ss_conf             4002006899998417744565699999999872068545013444778------9999999999888785528665777


Q ss_pred             CCCCCCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf             116778778741331665738771078778878999987812063877679
Q gi|254780625|r  239 YVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK  289 (289)
Q Consensus       239 ~~~~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk  289 (289)
                           +..|.+ ..++||+|+|+|| |+||++|++++++||+|||||.||-
T Consensus       219 -----~~~g~~-~~~~Vy~r~g~~C-~~Cg~~I~~~~~~~R~t~~Cp~CQh  262 (262)
T 1k3x_A          219 -----KHHGAL-FRFKVFHRDGEPC-ERCGSIIEKTTLSSRPFYWCPGCQH  262 (262)
T ss_dssp             ---------CC-CCCSSTTCTTSBC-TTTCCBCEEEEETTEEEEECTTTCC
T ss_pred             -----CCCCCE-EEEEEECCCCCCC-CCCCCEEEEEEECCCCCEECCCCCC
T ss_conf             -----888854-6788926596979-9999889999989981488745359