HHsearch results for GI: 254780625 and protein with PDBid: 1tdz_A

>1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM, FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A {Lactococcus lactis} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1pji_A* 1pm5_A* 1xc8_A* 3c58_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=100.00  E-value=0  Score=546.54  Aligned_cols=271  Identities=38%  Similarity=0.669  Sum_probs=254.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEE
Q ss_conf             96764367889889998679778899964833265787789997289889999605308999503553100152553279
Q gi|254780625|r    1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSF   80 (289)
Q Consensus         1 MPElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~   80 (289)
                      ||||||||++++.|++.++|++|++|++.++++++..++++.+.|.|++|++|.|+||||+|+|+++.+|++||||+|+|
T Consensus         1 MPElPEVe~~~~~L~~~l~g~~I~~v~~~~~~~~~~~~~~~~~~L~G~~i~~v~r~GK~l~~~~~~~~~l~~HlgMtG~~   80 (272)
T 1tdz_A            1 MPELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKY   80 (272)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCBCCEEEESCGGGBTTCHHHHHHHHTTCBEEEEEEETTEEEEEETTTEEEEEECTTTCEE
T ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCEE
T ss_conf             98479999999999997389999999989864347872889977599899999820489999854894699863114446


Q ss_pred             EEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             98147854224587663389997068876048999815876641001455301005323565553322111067888742
Q gi|254780625|r   81 IIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQF  160 (289)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~lGpD~l~~~~~~~~~~~~l  160 (289)
                      ++.+..    ...++|.++.+.++++      .++|.|+|+||.+.+....+...++.++++||||+++.++.+.|.+.+
T Consensus        81 ~~~~~~----~~~~~~~~~~~~~~~~------~~~~~D~r~fg~~~~~~~~~~~~~~~~~~lgpd~l~~~~~~~~~~~~~  150 (272)
T 1tdz_A           81 RLATLD----APREKHDHLTMKFADG------QLIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEKLFREKL  150 (272)
T ss_dssp             EEECTT----CCCCTTEEEEEECSSC------EEEEECTTSCCEEEEEEGGGHHHHHHHHTCCCCSSTTTCCHHHHHHHH
T ss_pred             EEECCC----CCCCCCCEEEEECCCC------EEEEEECCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf             750366----8887652699960398------499996232306777514101232133148987554435199999866


Q ss_pred             HCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             01454210011126543564136899999987178778312222001015899999999878876765421887553111
Q gi|254780625|r  161 HKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYV  240 (289)
Q Consensus       161 ~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~vl~~a~~~gG~~~~~~~  240 (289)
                      ..++++||++||||++||||||||+|||||+|||||++++++|+++|      +.+|+++++.+|..|++.||+++++| 
T Consensus       151 ~~~~~~Ik~~LlDQ~~iaGIGNiy~~EiLf~a~I~P~~~~~~L~~~e------~~~L~~~~~~vl~~a~~~~~~~~~~~-  223 (272)
T 1tdz_A          151 RKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESS------IHLLHDSIIEILQKAIKLGGSSIRTY-  223 (272)
T ss_dssp             HHCCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHH------HHHHHHHHHHHHHHHHHTTCCCC----
T ss_pred             HHCCCCCCEEEECCCEECCCCHHHHHHHHHHHCCCCCCCHHHCCHHH------HHHHHHHHHHHHHHHHHCCCCCCCCC-
T ss_conf             42033200267507635444473798998872798676752407999------99999999999999998199823245-


Q ss_pred             CCCCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf             6778778741331665738771078778878999987812063877679
Q gi|254780625|r  241 HIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK  289 (289)
Q Consensus       241 ~~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk  289 (289)
                      ...++.|.++.+|+||+|+|+|| |+||++|++++++||+|||||.|||
T Consensus       224 ~~~~~~g~~~~~~~Vy~r~g~~C-p~Cg~~I~~~~~~gR~t~~Cp~CQk  271 (272)
T 1tdz_A          224 SALGSTGKMQNELQVYGKTGEKC-SRCGAEIQKIKVAGRGTHFCPVCQQ  271 (272)
T ss_dssp             --CCCCCCGGGGCSSTTCTTSBC-TTTCCBCEEEEETTEEEEECTTTSC
T ss_pred             CCCCCCCCCCCEEEEECCCCCCC-CCCCCEEEEEEECCCCEEECCCCCC
T ss_conf             77898787764048838898979-9999989999999981099927789