HHsearch results for GI: 254780625 and protein with PDBid: 2zkq_m

>2zkq_m 40S ribosomal protein S18E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_M 3jyv_M*

Probab=95.57  E-value=0.013  Score=35.41  Aligned_cols=50  Identities=18%  Similarity=0.390  Sum_probs=41.0

Q ss_pred             CCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             54210011126543564136899999987178778312222001015899999999878
Q gi|254780625|r  164 NSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQ  222 (289)
Q Consensus       164 ~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~  222 (289)
                      +.+|.-+|   +.|-|||...|..||-.++|+|..++.+||++|      +..|-+.+.
T Consensus        23 ~K~v~~aL---t~I~GIG~~~A~~Ic~~lgI~~~~kvg~Lt~~q------l~kl~~~I~   72 (152)
T 2zkq_m           23 RRKIAFAI---TAIKGVGRRYAHVVLRKADIDLTKRAGELTEDE------VERVITIMQ   72 (152)
T ss_dssp             SSBHHHHG---GGSTTCCHHHHHHHHHHHTCCTTSBTTTSCHHH------HHHHHHHHH
T ss_pred             CCEEEEEE---ECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHH------HHHHHHHHH
T ss_conf             97887650---021065899999999993899543015199999------999999985