HHsearch results for GI: 254780625 and protein with PDBid: 3a46_A
>3a46_A Formamidopyrimidine-DNA glycosylase; helix two turns helix, zinc-LESS finger, hydrolase, THF, glycosidase, lyase, multifunctional enzyme; HET: DNA 3DR; 2.20A {Acanthamoeba polyphaga mimivirus} PDB: 3a45_A* 3a42_A
Probab=100.00 E-value=0 Score=469.74 Aligned_cols=265 Identities=23% Similarity=0.293 Sum_probs=223.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHH--HCCCEEEEEEECCEEEEEEECCCC------CCCC
Q ss_conf 96764367889889998679778899964833265787789997--289889999605308999503553------1001
Q gi|254780625|r 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAA--TRGKKIIDVSRRAKYLLIELEGNL------SIIV 72 (289)
Q Consensus 1 MPElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~--L~G~~I~~v~r~GK~l~l~l~~~~------~L~~ 72 (289)
|||||||+++++.|++.+.|++|++|++.++++.+..+..+.+. +.|++|++|.|+||||+|+|+++. .|..
T Consensus 1 MPElPEV~~~~~~l~~~~~g~~I~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~r~GK~l~~~l~~~~~~~~~~~~~~ 80 (289)
T 3a46_A 1 MPEGPEVALTADILEKYFKGKTLEYIDFISGRYSKSEPEGYDDFIANLPLKVSNVDTKGKFLWFELFDPNDKSNKWYIWN 80 (289)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCEEEEEEECSSHHHHSCCBTHHHHHHTCCEEEEEEEEETTEEEEEEEETTEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCCCCCEEEE
T ss_conf 98769999999999997189999899988885235788679999733785898999876799999536765456647984
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCH
Q ss_conf 52553279981478542245876633899970688760489998158766410014553010053235655533221110
Q gi|254780625|r 73 HLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTLGPEPADNSFN 152 (289)
Q Consensus 73 HlgM~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~lGpD~l~~~~~ 152 (289)
||+|+|.|.+ .+++|+|+.+.|+++. .++|.|+|+||++.+.++... ..+.+.+||||||++
T Consensus 81 ~l~m~g~~~~---------~~~~~~~~~~~~~~~~-----~l~f~D~R~fg~~~l~~~~~~-~~~~l~~lGpD~l~~--- 142 (289)
T 3a46_A 81 TFGLTGMWSL---------FEAKYTRAVLSFDNEL-----MAYFSDMRNFGTFKFSNSEKE-LKRKLNELGPDFLKN--- 142 (289)
T ss_dssp ECTTTEEEES---------SCCTTEEEEEEEGGGC-----EEEEEESSCCCEEEEECCHHH-HHHHHTTSCCBTTTC---
T ss_pred EEEECCCCEE---------CCCCCCEEEECCCCCE-----EEEEEECCCCCEEEEECCHHH-HHHHHHCCCCCHHHH---
T ss_conf 6664264011---------1476305664034306-----999981221453566120110-014441047623566---
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCC-CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6788874201454210011126543-564136899999987178778312222001015899999999878876765421
Q gi|254780625|r 153 AIYLTHQFHKKNSNLKNALLNQKIV-AGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDA 231 (289)
Q Consensus 153 ~~~~~~~l~~~~~~Ik~~LlDQ~~i-aGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~vl~~a~~~ 231 (289)
.+.+.+.+++++++||.+||||+.| |||||||+|||||+|||||++++++||++| +++|+++|+.+|..|++.
T Consensus 143 ~~~~~~~~~~~~~~ik~~LLdq~~i~aGIGNiya~EiLf~a~I~P~~~~~~Ls~~e------~~~L~~~i~~vl~~a~~~ 216 (289)
T 3a46_A 143 DDIDISKIKKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQE------IENLWYWIKYETKLAYDS 216 (289)
T ss_dssp SCCCGGGGGGCCSBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHH------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHCCHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHC
T ss_conf 79999997542022457752466267064089999999985068546667499999------999999999999999982
Q ss_pred CCCCC-CCCC---CCCCCCCCC--------HHHEEEECCCCCCCC-CCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf 88755-3111---677877874--------133166573877107-8778878999987812063877679
Q gi|254780625|r 232 GGSSL-RDYV---HIDGSIGYF--------QNAFSVYGKTGEPCL-SNCGQMIRRIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 232 gG~~~-~~~~---~~~g~~g~~--------~~~~~vy~r~g~~C~-~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289)
+|.+. .++. ...|..+++ +.+|+||+|+|+||+ +.||++|.+..++||+|||||+|||
T Consensus 217 ~g~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~Vy~r~~~pc~~~~c~~~I~~~~~~gR~ty~CP~CQk 287 (289)
T 3a46_A 217 NHIGYMVNLENESSKIGRKNYHPNIHPTEKEFDFLVYRKKKDPNGNKVIADKIIGSGKNKRTTYWAPAIQK 287 (289)
T ss_dssp SCSSSCGGGHHHHTTSCCCCCSTTCCCSCSSCCCSSTTCSBCTTSCBCEEECCSCCTTCCCCEEECTTTCB
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCC
T ss_conf 89662011356666678736555655556642689989998988887578779997818832499767386