>3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 3go8_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* ...

Probab=100.00 E-value=0 Score=495.93 Aligned_cols=254 Identities=35% Similarity=0.613 Sum_probs=232.1 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-C-CCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCE Q ss_conf 676436788988999867977889996483326-5-78778999728988999960530899950355310015255327 Q gi|254780625|r 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLR-F-DFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGS 79 (289) Q Consensus 2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~-~-~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~ 79 (289) |||||||+++++|++.+.|++|++|.+.+++.. . ..++.|.+.|.|++|++|+|+||+|+|+|++ .+|++||||+|+ T Consensus 1 PELPEVe~~~~~L~~~~~Gk~I~~v~~~~~~~~~~~~~~~~~~~~l~G~~i~~v~r~GK~l~~~~~~-~~l~~HlgMtG~ 79 (256) T 3gpu_A 1 PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDR-DALISHLRMEGR 79 (256) T ss_dssp CCHHHHHHHHHHHHHHHTTCBEEEEEESCGGGEEESSSHHHHHHHHTTCBCCEEEEETTEEEEECSS-EEEEEECTTTCE T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHHHCCCCEEEEEEECCEEEHHHCCC-CCEEEEEEECCE T ss_conf 9748999999999998389999899986887462689969999774998998998632888002067-724522343544 Q ss_pred EEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 99814785422458766338999706887604899981587664100145530100532356555332211106788874 Q gi|254780625|r 80 FIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQ 159 (289) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~lGpD~l~~~~~~~~~~~~ 159 (289) |.+.+.+. +.++|.|+.+.|+++. .+.|.|.|+||.+.+.........+.+..+||||+++.++.+.|.+. T Consensus 80 ~~~~~~~~----~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~d~l~~~~~~~~~~~~ 150 (256) T 3gpu_A 80 YAVASALE----PLEPHTHVVFCFTDGS-----ELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAER 150 (256) T ss_dssp EEEEETTS----CCCTTEEEEEEETTSE-----EEEEECTTCCCEEEEEEHHHHTTSTTTTTCCCCTTSTTSCHHHHHHH T ss_pred EEEEECCC----CCCCCCEEEEEECCCC-----EEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 32320236----7888616999975997-----69998513344101104541013321034688821001689999888 Q ss_pred HHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 20145421001112654356413689999998717877831222200101589999999987887676542188755311 Q gi|254780625|r 160 FHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDY 239 (289) Q Consensus 160 l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~vl~~a~~~gG~~~~~~ 239 (289) +++++++||++||||++||||||||+|||||+|||||++++++||++| +++|+++++.||.+|++.|+ T Consensus 151 ~~~~~~~Ik~~LlDQ~~iaGIGNiya~EiLf~a~I~P~~~~~~Ls~~~------~~~L~~~~~~vl~~ai~~g~------ 218 (256) T 3gpu_A 151 AVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKE------IERLHEEMVATIGEAVMKGQ------ 218 (256) T ss_dssp HHTCCSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHH------HHHHHHHHHHHHHHHHC--------- T ss_pred HHCCCCCHHHHHCCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHH------HHHHHHHHHHHHHHHHHCCC------ T ss_conf 755776455631136513343488999999973148376313389999------99999999999999996688------ Q ss_pred CCCCCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC Q ss_conf 16778778741331665738771078778878999987812063877679 Q gi|254780625|r 240 VHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289) Q Consensus 240 ~~~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289) ++++||+|+|+|| |+||++|++++++||+|||||.||| T Consensus 219 -----------~~~~Vy~r~g~~C-~~Cg~~I~~~~~~gR~t~~Cp~CQk 256 (256) T 3gpu_A 219 -----------HHLYVYGRQGNPC-KRCGTPIEKTVVAGRGTHYCPRCQR 256 (256) T ss_dssp -------------CCSTTCTTSBC-TTTCCBCEEEEETTEEEEECTTTCC T ss_pred -----------CEEEECCCCCCCC-CCCCCEEEEEEECCCCEEECCCCCC T ss_conf -----------4088738997967-9999989999999982098713149

HHsearch results for GI: 254780625 and protein with PDBid: 3gpu_A