HHSEARCH alignment of GI: 254780625 and SCOP domain: d1ee8a2

Alignment

Probab=99.95  E-value=1e-28  Score=201.55  Aligned_cols=121  Identities=35%  Similarity=0.594  Sum_probs=105.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf             67643678898899986797788999648332657877899972898899996053089995035531001525532799
Q gi|254780625|r    2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSFI   81 (289)
Q Consensus         2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~~   81 (289)
                      |||||||++++.|++.+.|++|++|.+.++...     .+.+.+.|++|++|.|+||||+|+||++.+|++||||||+|.
T Consensus         1 PELPEVe~~~~~L~~~~~g~~I~~v~~~~~~~~-----~~~~~l~g~~I~~v~RrGK~l~~~l~~~~~l~~HLgMtG~~~   75 (121)
T d1ee8a2           1 PELPEVETTRRRLRPLVLGQTLRQVVHRDPARY-----RNTALAEGRRILEVDRRGKFLLFALEGGVELVAHLGMTGGFR   75 (121)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCEEEEEECSCTTTE-----ESGGGGTTEEEEEEEEETTEEEEEETTTEEEEEECTTTCEEE
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCC-----CHHHHCCCCEEEEEEEEEEEEEEEECCCCEEEECCCCCEEEE
T ss_conf             987119999999999868999889993587532-----102221798998897654999999489638986000050676


Q ss_pred             EECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCC
Q ss_conf             8147854224587663389997068876048999815876641001455301005323565
Q gi|254780625|r   82 IEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTL  142 (289)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~l  142 (289)
                      +.         +++|+|+.|.|++.      .++|+|+|+||++++++..+..++|.+++|
T Consensus        76 ~~---------~~kh~~~~~~~d~~------~L~f~D~RrFG~i~~~~~~~~~~~p~l~~L  121 (121)
T d1ee8a2          76 LE---------PTPHTRAALVLEGR------TLYFHDPRRFGRLFGVRRGDYREIPLLLRL  121 (121)
T ss_dssp             SS---------CCTTEEEEEEESSC------EEEEECTTCCCEEEEEETTCCTTCTHHHHC
T ss_pred             EE---------CCCCCEEEEEECCC------EEEEECCCCCCEEEEEECCCHHCCHHHHCC
T ss_conf             40---------36760699996698------899978888748999608871119324419

SCOP domain information

class: All beta proteins
fold: N-terminal domain of MutM-like DNA repair proteins
superfamily: N-terminal domain of MutM-like DNA repair proteins
family: N-terminal domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Thermus thermophilus [TaxId: 274]