HHSEARCH alignment of GI: 254780625 and SCOP domain: d1k82a2

Alignment
>d1k82a2 b.113.1.1 (A:1-128) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=99.96  E-value=2.3e-29  Score=205.78  Aligned_cols=128  Identities=35%  Similarity=0.524  Sum_probs=110.2

Q ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf             67643678898899986797788999648332657877899972898899996053089995035531001525532799
Q gi|254780625|r    2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSFI   81 (289)
Q Consensus         2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~~   81 (289)
                      |||||||++++.|++.+.|++|++|.+.++++++..++.+ +.|.|++|++|.|+||||+++||++ +|++||||||+|.
T Consensus         1 PELPEVEtv~~~L~~~~~g~~I~~v~~~~~~~~~~~~~~~-~~l~g~~i~~v~RrGK~l~~~l~~~-~l~iHLgMtG~l~   78 (128)
T d1k82a2           1 PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEI-YRLSDQPVLSVQRRAKYLLLELPEG-WIIIHLGMSGSLR   78 (128)
T ss_dssp             CCHHHHHHHHHHHHHHHBTCEEEEEEESCCBSSSBCCHHH-HHCCSEEBCEEEEETTEEEEECSSC-EEEEECTTTCEEE
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCHHH-HHHHCCCEEHHHHEEEEEEEECCCC-CEEEEECCCEEEE
T ss_conf             9870389999999998689999899999843114068779-9862885211220446799984799-6798862431899


Q ss_pred             EECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCC
Q ss_conf             8147854224587663389997068876048999815876641001455301005323565
Q gi|254780625|r   82 IEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTL  142 (289)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~l  142 (289)
                      +.....    .+++|+|+.|.|+|+.     .++|+|+|+||++.+.++.+  .++.+++|
T Consensus        79 ~~~~~~----~~~kh~~~~~~~~~g~-----~L~f~D~RrFG~i~~~~~~~--~~~~l~~L  128 (128)
T d1k82a2          79 ILPEEL----PPEKHDHVDLVMSNGK-----VLRYTDPRRFGAWLWTKELE--GHNVLTHL  128 (128)
T ss_dssp             EESSSC----CCCTTCCEEEEETTSC-----EEEEECSSCCCEEEEESCSS--SSTTTTTC
T ss_pred             EEECCC----CCCCCEEEEEEECCCC-----EEEEECCCCCEEEEECCCHH--HCHHCCCC
T ss_conf             985568----9887349999979998-----99998789701899857801--08121179


SCOP domain information

class: All beta proteins
fold: N-terminal domain of MutM-like DNA repair proteins
superfamily: N-terminal domain of MutM-like DNA repair proteins
family: N-terminal domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Escherichia coli [TaxId: 562]