HHSEARCH alignment of GI: 254780625 and SCOP domain: d1tdza2

Alignment
>d1tdza2 b.113.1.1 (A:2-131) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=99.96  E-value=7.8e-30  Score=208.75  Aligned_cols=129  Identities=29%  Similarity=0.504  Sum_probs=115.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf             76436788988999867977889996483326578778999728988999960530899950355310015255327998
Q gi|254780625|r    3 ELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSFII   82 (289)
Q Consensus         3 ElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~~~   82 (289)
                      ||||||+++++|++.+.|++|++|++.+++.+...+++|.+.|.|++|.+|.|+||||++.|+++.+|++||||||+|.+
T Consensus         1 ELPEVe~~~~~L~~~l~g~~I~~v~v~~~~~~~~~~~~~~~~l~g~~i~~v~RrGK~l~i~l~~~~~L~~HLgMtG~~~~   80 (130)
T d1tdza2           1 ELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKYRL   80 (130)
T ss_dssp             CHHHHHHHHHHHHHHHTTCBCCEEEESCGGGBTTCHHHHHHHHTTCBEEEEEEETTEEEEEETTTEEEEEECTTTCEEEE
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCEEEEE
T ss_conf             98318999999999857998999997674331486288898735965775780079999995489599986115607987


Q ss_pred             ECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCC
Q ss_conf             14785422458766338999706887604899981587664100145530100532356
Q gi|254780625|r   83 EHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRT  141 (289)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~  141 (289)
                      ...+.    +.++|+|+.|.|+++      .++|.|+|+||+++++++.+...++.+++
T Consensus        81 ~~~~~----~~~kh~~~~~~~~~g------~l~f~D~R~FG~i~l~~~~~~~~~~~~kk  129 (130)
T d1tdza2          81 ATLDA----PREKHDHLTMKFADG------QLIYADVRKFGTWELISTDQVLPYFLKKK  129 (130)
T ss_dssp             ECTTC----CCCTTEEEEEECSSC------EEEEECTTSCCEEEEEEGGGHHHHHHHHT
T ss_pred             EECCC----CCCCCCEEEEECCCC------EEEEECCCCEEEEEEEECCCCCCCHHHCC
T ss_conf             20468----987672899990899------99998489807999987852355445507


SCOP domain information

class: All beta proteins
fold: N-terminal domain of MutM-like DNA repair proteins
superfamily: N-terminal domain of MutM-like DNA repair proteins
family: N-terminal domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Lactococcus lactis [TaxId: 1358]