PSIBLAST alignment of GI: 254780625 and protein with PDB id: 1nnj
>gi|28948974|pdb|1NNJ|A Chain A, Crystal Structure Complex Between The Lactococcus Lactis Fpg And An Abasic Site Containing Dna Length = 271
>gi|49258485|pdb|1PJJ|A Chain A, Complex Between The Lactococcus Lactis Fpg And An Abasic Site Containing Dna Length = 271
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 100/287 (34%), Positives = 141/287 (49%), Gaps = 18/287 (6%)
Query: 3 ELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLI 62
ELPEVE +RR L + + I + GK I +SRR KYL+
Sbjct: 2 ELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIF 61
Query: 63 ELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRF 122
E+ + +I HL M G + + + H+H+T+ + +IY D R+F
Sbjct: 62 EIGDDFRLISHLRMEGKYRLATLDAPREK----HDHLTMKFADGQ------LIYADVRKF 111
Query: 123 GFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGN 182
G +L+ T Y + +GPEP F+ + K +K LL Q +VAG+GN
Sbjct: 112 GTWELISTDQVLPYFLKKKIGPEPTYEDFDEKLFREKLRKSTKKIKPYLLEQTLVAGLGN 171
Query: 183 IYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHI 242
IYV E LW AK+ P ++T LI++ ++ L I ++L AI GGSS+R Y
Sbjct: 172 IYVDEVLWLAKIHPEKETNQLIES------SIHLLHDSIIEILQKAIKLGGSSIRTY-SA 224
Query: 243 DGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
GS G QN VYGKTGE C S CG I++I AGR T +C CQ+
Sbjct: 225 LGSTGKMQNELQVYGKTGEKC-SRCGAEIQKIKVAGRGTHFCPVCQQ 270