PSIBLAST alignment of GI: 254780625 and protein with PDB id: 1q3b
>gi|51247248|pdb|1Q3B|A Chain A, Crystal Structure Of The Dna Repair Enzyme Endonuclease- Viii (Nei) From E. Coli: The R252a Mutant At 2.05 Resolution. Length = 262
>gi|168988638|pdb|2OPF|A Chain A, Crystal Structure Of The Dna Repair Enzyme Endonuclease- Viii (Nei) From E. Coli (R252a) In Complex With Ap-Site Containing Dna Substrate Length = 262
Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 58/290 (20%), Positives = 106/290 (36%), Gaps = 32/290 (11%)
Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61
PE PE+ NL +K +TD+ L + + G+ + V R K LL
Sbjct: 1 PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQL-----KTYQSQLIGQHVTHVETRGKALL 55
Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121
+L++ H + G + + T + K ++Y+
Sbjct: 56 THFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKL-------QTADKTILLYSASD- 107
Query: 122 FGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQ---FHKKNSNLKNALLNQKIVA 178
++++ +P L+ +GP+ D + + + +N LL+Q +A
Sbjct: 108 ---IEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLA 164
Query: 179 GIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRD 238
G+GN E LW+ L+ K + L L L + ++ + G
Sbjct: 165 GLGNYLRVEILWQVGLTGNHKAKDLNAAQ------LDALAHALLEIPRFSYATRGQ---- 214
Query: 239 YVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQ 288
V + G F V+ + GEPC CG +I + + ++C CQ
Sbjct: 215 -VDENKHHGAL-FRFKVFHRDGEPC-ERCGSIIEKTTLSSAPFYWCPGCQ 261