PSIBLAST alignment of GI: 254780625 and protein with PDB id: 2oq4
>gi|168988643|pdb|2OQ4|A Chain A, Crystal Structure Of The Dna Repair Enzyme Endonuclease- Viii (Nei) From E. Coli (E2q) In Complex With Ap-Site Containing Dna Substrate Length = 262
>gi|168988644|pdb|2OQ4|B Chain B, Crystal Structure Of The Dna Repair Enzyme Endonuclease- Viii (Nei) From E. Coli (E2q) In Complex With Ap-Site Containing Dna Substrate Length = 262
Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 57/288 (19%), Positives = 105/288 (36%), Gaps = 32/288 (11%)
Query: 4 LPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIE 63
PE+ NL +K +TD+ L + + G+ + V R K LL
Sbjct: 3 GPEIRRAADNLEAAIKGKPLTDVWFAFPQL-----KTYQSQLIGQHVTHVETRGKALLTH 57
Query: 64 LEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFG 123
+L++ H + G + + T + K ++Y+
Sbjct: 58 FSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKL-------QTADKTILLYSASD--- 107
Query: 124 FMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQ---FHKKNSNLKNALLNQKIVAGI 180
++++ +P L+ +GP+ D + + + +N LL+Q +AG+
Sbjct: 108 -IEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGL 166
Query: 181 GNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYV 240
GN E LW+ L+ K + L L L + ++ + G V
Sbjct: 167 GNYLRVEILWQVGLTGNHKAKDLNAAQ------LDALAHALLEIPRFSYATRGQ-----V 215
Query: 241 HIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQ 288
+ G F V+ + GEPC CG +I + + R ++C CQ
Sbjct: 216 DENKHHGAL-FRFKVFHRDGEPC-ERCGSIIEKTTLSSRPFYWCPGCQ 261