RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780625|ref|YP_003065038.1| formamidopyrimidine-DNA
glycosylase [Candidatus Liberibacter asiaticus str. psy62]
         (289 letters)



>1k3x_A Endonuclease VIII; hydrolase/DNA; HET: BRU PED; 1.25A
           {Escherichia coli} (A:125-262)
          Length = 138

 Score =  142 bits (360), Expect = 4e-35
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 16/151 (10%)

Query: 142 LGPEPADNSFNAIYLTHQFHK---KNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIR 198
           +GP+  D +     +  +      +N      LL+Q  +AG+GN    E LW+  L+   
Sbjct: 1   VGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNH 60

Query: 199 KTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGK 258
           K + L          L  L   + ++   +    G    +  H     G       V+ +
Sbjct: 61  KAKDL------NAAQLDALAHALLEIPRFSYATRGQVDENKHH-----GALFRFK-VFHR 108

Query: 259 TGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
            GEPC   CG +I +   + R  ++C  CQ 
Sbjct: 109 DGEPCE-RCGSIIEKTTLSSRPFYWCPGCQH 138


>1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM,
           FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A
           {Lactococcus lactis} (A:137-272)
          Length = 136

 Score =  142 bits (359), Expect = 5e-35
 Identities = 58/141 (41%), Positives = 76/141 (53%), Gaps = 8/141 (5%)

Query: 149 NSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNG 208
             F+      +  K    +K  LL Q +VAG+GNIYV E LW AK+ P ++T  LI    
Sbjct: 3   EDFDEKLFREKLRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLI---- 58

Query: 209 TPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCG 268
             +  ++ L   I ++L  AI  GGSS+R Y    GS G  QN   VYGKTGE C   CG
Sbjct: 59  --ESSIHLLHDSIIEILQKAIKLGGSSIRTY-SALGSTGKMQNELQVYGKTGEKCS-RCG 114

Query: 269 QMIRRIVQAGRSTFYCTYCQK 289
             I++I  AGR T +C  CQ+
Sbjct: 115 AEIQKIKVAGRGTHFCPVCQQ 135


>3a46_A Formamidopyrimidine-DNA glycosylase; helix two turns helix,
           zinc-LESS finger, hydrolase, THF, glycosidase, lyase,
           multifunctional enzyme; HET: DNA 3DR; 2.20A
           {Acanthamoeba polyphaga mimivirus} PDB: 3a45_A* 3a42_A
           (A:144-289)
          Length = 146

 Score =  137 bits (347), Expect = 1e-33
 Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 20/149 (13%)

Query: 155 YLTHQFHKKNSNLKNALLNQK-IVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDI 213
               +  K    +   L++QK I +G+GN  V E L+RAK+ P +   +L          
Sbjct: 2   IDISKIKKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNL------TDQE 55

Query: 214 LYKLIQEIQKVLIDAIDAGGSSL------------RDYVHIDGSIGYFQNAFSVYGKTGE 261
           +  L   I+     A D+                 R   H +      +  F VY K  +
Sbjct: 56  IENLWYWIKYETKLAYDSNHIGYMVNLENESSKIGRKNYHPNIHPTEKEFDFLVYRKKKD 115

Query: 262 PCL-SNCGQMIRRIVQAGRSTFYCTYCQK 289
           P         I    +  R+T++    QK
Sbjct: 116 PNGNKVIADKIIGSGKNKRTTYWAPAIQK 144


>3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search,
           base extrusion; HET: DNA 8OG; 1.62A {Geobacillus
           stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A
           2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A*
           2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A*
           1r2y_A* 3jr5_A* ... (A:133-256)
          Length = 124

 Score =  134 bits (339), Expect = 1e-32
 Identities = 49/148 (33%), Positives = 69/148 (46%), Gaps = 24/148 (16%)

Query: 142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTR 201
           LGPEP   +F+   L  +  K   ++K  LL+  +VAG GNIYV E+L+RA + P R   
Sbjct: 1   LGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAA 60

Query: 202 SLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGE 261
           S           + +L +E+   + +A+  G   L                  VYG+ G 
Sbjct: 61  S------LSSKEIERLHEEMVATIGEAVMKGQHHLY-----------------VYGRQGN 97

Query: 262 PCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
           PC   CG  I + V AGR T YC  CQ+
Sbjct: 98  PCK-RCGTPIEKTVVAGRGTHYCPRCQR 124


>1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM,
           FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A
           {Lactococcus lactis} (A:1-136)
          Length = 136

 Score =  133 bits (336), Expect = 3e-32
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 10/146 (6%)

Query: 1   MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYL 60
           MPELPEVE +RR L   +    +  I      +             GK I  +SRR KYL
Sbjct: 1   MPELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYL 60

Query: 61  LIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPR 120
           + E+  +  +I HL M G + +            +H+H+T+   +       ++IY D R
Sbjct: 61  IFEIGDDFRLISHLRMEGKYRL----ATLDAPREKHDHLTMKFADG------QLIYADVR 110

Query: 121 RFGFMDLVETSLKYQYPPLRTLGPEP 146
           +FG  +L+ T     Y   + +GPEP
Sbjct: 111 KFGTWELISTDQVLPYFLKKKIGPEP 136


>3a46_A Formamidopyrimidine-DNA glycosylase; helix two turns helix,
           zinc-LESS finger, hydrolase, THF, glycosidase, lyase,
           multifunctional enzyme; HET: DNA 3DR; 2.20A
           {Acanthamoeba polyphaga mimivirus} PDB: 3a45_A* 3a42_A
           (A:1-143)
          Length = 143

 Score =  126 bits (317), Expect = 4e-30
 Identities = 31/151 (20%), Positives = 46/151 (30%), Gaps = 11/151 (7%)

Query: 1   MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPH--HFSAATRGKKIIDVSRRAK 58
           MPE PEV +    L    K  T+  I           P       A    K+ +V  + K
Sbjct: 1   MPEGPEVALTADILEKYFKGKTLEYIDFISGRYSKSEPEGYDDFIANLPLKVSNVDTKGK 60

Query: 59  YLLIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYND 118
           +L  EL           +  +F +         K   +    +S  N          ++D
Sbjct: 61  FLWFELFDPNDKSNKWYIWNTFGLTGMWSLFEAK---YTRAVLSFDNEL-----MAYFSD 112

Query: 119 PRRFGFMDLVETSLKYQYPPLRTLGPEPADN 149
            R FG      +        L  LGP+   N
Sbjct: 113 MRNFGTFKFSNSEK-ELKRKLNELGPDFLKN 142


>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix
           two-turns helix, riken structural genomics/proteomics
           initiative, RSGI; 1.90A {Thermus thermophilus HB8}
           (A:1-120)
          Length = 120

 Score =  118 bits (298), Expect = 7e-28
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 20/138 (14%)

Query: 2   PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61
           PELPEVE  RR L  ++   T+  +       R    +  +A   G++I++V RR K+LL
Sbjct: 1   PELPEVETTRRRLRPLVLGQTLRQV-----VHRDPARYRNTALAEGRRILEVDRRGKFLL 55

Query: 62  IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121
             LEG + ++ HLGM+G F +E            H    + L          + ++DPRR
Sbjct: 56  FALEGGVELVAHLGMTGGFRLEP---------TPHTRAALVLEGR------TLYFHDPRR 100

Query: 122 FGFMDLVETSLKYQYPPL 139
           FG +  V      + P L
Sbjct: 101 FGRLFGVRRGDYREIPLL 118


>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix,
           zinc-LESS finger, hydrolase; 2.10A {Homo sapiens}
           (A:156-364)
          Length = 209

 Score =  118 bits (296), Expect = 1e-27
 Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 24/141 (17%)

Query: 163 KNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSL--------------IQNNG 208
            +  +  ALL+Q+   GIGN    E L+R K+ P  K RS+              +    
Sbjct: 2   FDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKI 61

Query: 209 TPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCG 268
             K     L++    V  + +  GG         +     F+     YG  G   L    
Sbjct: 62  RTKLQNPDLLELCHSVPKEVVQLGGRGYGSESG-EEDFAAFRAWLRCYGMPGMSSL-QDR 119

Query: 269 QMIRRIVQAGRSTFYCTYCQK 289
                    GR+ ++      
Sbjct: 120 --------HGRTIWFQGDPGP 132


>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix,
           zinc-LESS finger, hydrolase; 2.10A {Homo sapiens}
           (A:1-133)
          Length = 133

 Score =  115 bits (289), Expect = 7e-27
 Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 12/135 (8%)

Query: 1   MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRF-----DFPHHFSAATRGKKIIDVSR 55
           MPE PE+ +  + +    + +            R      +   +  +A+   K + +  
Sbjct: 1   MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLIL 60

Query: 56  RAKYLLIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVI 115
                    +  L+++   GMSGSF +         + P+H H+           +  + 
Sbjct: 61  SPLPGAQPQQEPLALVFRFGMSGSFQLVPRE-----ELPRHAHLRFYTAP--PGPRLALC 113

Query: 116 YNDPRRFGFMDLVET 130
           + D RRFG  DL   
Sbjct: 114 FVDIRRFGRWDLGGK 128


>3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search,
           base extrusion; HET: DNA 8OG; 1.62A {Geobacillus
           stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A
           2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A*
           2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A*
           1r2y_A* 3jr5_A* ... (A:1-132)
          Length = 132

 Score =  115 bits (288), Expect = 9e-27
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 12/140 (8%)

Query: 2   PELPEVEIIRRNLMMVMKNMTVTDICLHR-KNLRFDF-PHHFSAATRGKKIIDVSRRAKY 59
           PELPEVE IRR L+ ++   T+ D+ +     +R       F+A   G+ +  + RR K+
Sbjct: 1   PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKF 60

Query: 60  LLIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDP 119
           L   L+ + ++I HL M G + +   +         H HV    T+ +      + Y D 
Sbjct: 61  LKFLLDRD-ALISHLRMEGRYAVAS-ALEPLEP---HTHVVFCFTDGS-----ELRYRDV 110

Query: 120 RRFGFMDLVETSLKYQYPPL 139
           R+FG M +       + PPL
Sbjct: 111 RKFGTMHVYAKEEADRRPPL 130


>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex,
           DNA repair, beta sandwich, zinc finger, helix two-turns
           helix, hydrolase/DNA complex; HET: PED; 2.10A
           {Escherichia coli} (A:129-225)
          Length = 97

 Score =  115 bits (289), Expect = 9e-27
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 6/102 (5%)

Query: 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRS 202
           GPEP  + FN  YL  +  KK + +K  L++ K+V G+GNIY  E+L+ A + P R   S
Sbjct: 1   GPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASS 60

Query: 203 LIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDG 244
           L             L + I+ VL+ +I+ GG++L+D++  DG
Sbjct: 61  L------SLAECELLARVIKAVLLRSIEQGGTTLKDFLQSDG 96


>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix
           two-turns helix, riken structural genomics/proteomics
           initiative, RSGI; 1.90A {Thermus thermophilus HB8}
           (A:121-219)
          Length = 99

 Score =  110 bits (276), Expect = 3e-25
 Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 8/105 (7%)

Query: 142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTR 201
           LGPEP   +F          +    LK  LL+Q++ AG+GNIY  EAL+RA+LSP R  R
Sbjct: 1   LGPEPLSEAFAFPGFFRGLKESARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPAR 60

Query: 202 SLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRD--YVHIDG 244
           SL       ++   +L + +++VL +A++ GGS+L D  Y   DG
Sbjct: 61  SL------TEEEARRLYRALREVLAEAVELGGSTLSDQSYRQPDG 99


>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex,
           DNA repair, beta sandwich, zinc finger, helix two-turns
           helix, hydrolase/DNA complex; HET: PED; 2.10A
           {Escherichia coli} (A:1-128)
          Length = 128

 Score =  109 bits (273), Expect = 5e-25
 Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 11/129 (8%)

Query: 2   PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61
           PELPEVE  RR +   +   T+    +    LR+            + ++ V RRAKYLL
Sbjct: 1   PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVS-EEIYRLSDQPVLSVQRRAKYLL 59

Query: 62  IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121
           +EL     II+HLGMSGS         + +   +H+HV + ++N        + Y DPRR
Sbjct: 60  LELP-EGWIIIHLGMSGSL----RILPEELPPEKHDHVDLVMSNGK-----VLRYTDPRR 109

Query: 122 FGFMDLVET 130
           FG     + 
Sbjct: 110 FGAWLWTKE 118


>1k3x_A Endonuclease VIII; hydrolase/DNA; HET: BRU PED; 1.25A
           {Escherichia coli} (A:1-124)
          Length = 124

 Score =  104 bits (261), Expect = 1e-23
 Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 16/139 (11%)

Query: 2   PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61
           PE PE+     NL   +K   +TD+        F     + +   G+ +  V  R K LL
Sbjct: 1   PEGPEIRRAADNLEAAIKGKPLTDV-----WFAFPQLKTYQSQLIGQHVTHVETRGKALL 55

Query: 62  IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121
                +L++  H  + G + +   +  +P        + + L                  
Sbjct: 56  THFSNDLTLYSHNQLYGVWRV-VDTGEEPQT---TRVLRVKLQTADK-------TILLYS 104

Query: 122 FGFMDLVETSLKYQYPPLR 140
              ++++       +P L+
Sbjct: 105 ASDIEMLRPEQLTTHPFLQ 123


>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix
           two-turns helix; 2.00A {Sulfolobus shibatae} (A:230-311)
          Length = 82

 Score = 79.0 bits (195), Expect = 6e-16
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 8/89 (8%)

Query: 142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTR 201
           + P P     +   +    +    +             IG+    + L  A L P +K +
Sbjct: 1   VKPHPYG--VDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVK 58

Query: 202 SLIQNNGTPKDILYKLIQEIQKVLIDAID 230
           +L       ++ + +L++  +K       
Sbjct: 59  NL------TEEEITRLVETFKKYEDFRSP 81


>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex,
           DNA repair, beta sandwich, zinc finger, helix two-turns
           helix, hydrolase/DNA complex; HET: PED; 2.10A
           {Escherichia coli} (A:226-268)
          Length = 43

 Score = 75.1 bits (185), Expect = 9e-15
 Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 247 GYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
           GYF     VYG+ GEPC   CG  I     A R+TFYC  CQK
Sbjct: 2   GYFAQELQVYGRKGEPCR-VCGTPIVATKHAQRATFYCRQCQK 43


>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix
           two-turns helix, riken structural genomics/proteomics
           initiative, RSGI; 1.90A {Thermus thermophilus HB8}
           (A:220-266)
          Length = 47

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 247 GYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
           G FQ   +VYG+ G PC   CG+ + R V AGR T +C  CQ 
Sbjct: 3   GGFQTRHAVYGREGLPCP-ACGRPVERRVVAGRGTHFCPTCQG 44


>3d4r_A Domain of unknown function from the PFAM-B_34464 family;
           NP_987166.1, structural genomics, joint center for
           structural genomics, JCSG; HET: MSE; 2.20A
           {Methanococcus maripaludis} (A:1-98)
          Length = 98

 Score = 28.3 bits (63), Expect = 1.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 112 YRVIYNDPRRFGFMDLVETSLKYQYPPLRTL 142
           Y+VIY+D  ++  +D ++  +  QYP   TL
Sbjct: 63  YQVIYDDLAKYXSLDTLKKDVLIQYPDKHTL 93


>2jh1_A MIC1, micronemal protein 1; cell adhesion, microneme, MAR
           domain, cell invasion; 1.90A {Toxoplasma gondii} PDB:
           2jh7_A* 2jhd_A* 3f53_A* 3f5a_A* 3f5e_A* (A:1-127)
          Length = 127

 Score = 28.0 bits (62), Expect = 1.5
 Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 1/40 (2%)

Query: 247 GYFQNAFSVYGKTGEPCLSNCGQMIR-RIVQAGRSTFYCT 285
                  S     G  C+ +CG  I        +++ + T
Sbjct: 71  DTASLLESNQENNGVNCVDDCGHTIPCPGGVHRQNSNHAT 110


>3gzu_A Inner capsid protein VP2; 7RP, DLP, metal- binding, virion,
           zinc, core protein, RNA-binding, icosaderal virus; 3.80A
           {Rotavirus A} (A:102-180,A:753-767)
          Length = 94

 Score = 27.7 bits (61), Expect = 2.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 146 PADNSFNAIYLTHQFHKKNS 165
           P D +FN  +L HQF  +NS
Sbjct: 66  PIDYAFNEYFLQHQFDFRNS 85


>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme;
          structural genomics, NYSGXRC, target 9440A, enolase
          superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}
          (A:1-127,A:364-371)
          Length = 135

 Score = 26.6 bits (58), Expect = 3.7
 Identities = 5/29 (17%), Positives = 15/29 (51%)

Query: 18 MKNMTVTDICLHRKNLRFDFPHHFSAATR 46
          M ++ +  I + + +L +    ++ +A R
Sbjct: 1  MSDLKIARIDVFQVDLPYSGGVYYLSAGR 29


>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme,
          muconolactone binding, structural genomics, PSI-2; HET:
          MUC; 1.70A {Pseudomonas fluorescens pf-5} PDB: 3ct2_A*
          3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A
          (A:1-129,A:360-382)
          Length = 152

 Score = 26.7 bits (58), Expect = 3.7
 Identities = 6/31 (19%), Positives = 10/31 (32%)

Query: 16 MVMKNMTVTDICLHRKNLRFDFPHHFSAATR 46
          M +    +  I     +L    PH  +  T 
Sbjct: 1  MSLHASAIESIETIIVDLPTIRPHKLAMHTM 31


>2vea_A Phytochrome-like protein CPH1; arginine finger,
           phosphorylation, tandem GAF domain, knot, kinase,
           receptor, PAS domain, chromophore; HET: CYC; 2.21A
           {Synechocystis SP} (A:333-443,A:488-520)
          Length = 144

 Score = 26.4 bits (58), Expect = 4.1
 Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 20/80 (25%)

Query: 220 EIQKVLID----------AIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQ 269
           E + VL+D           +      L       G+   F     + G+T +       +
Sbjct: 1   EHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDE------K 54

Query: 270 MIRRIVQ----AGRSTFYCT 285
            ++ ++Q          + T
Sbjct: 55  AVQYLLQWLENREVQDVFFT 74


>3cyj_A Mandelate racemase/muconate lactonizing enzyme- like
          protein; structural genomics, isomerase, PSI-2; 2.30A
          {Rubrobacter xylanophilus dsm 9941} (A:1-124,A:356-372)
          Length = 141

 Score = 26.6 bits (58), Expect = 4.3
 Identities = 4/32 (12%), Positives = 9/32 (28%)

Query: 16 MVMKNMTVTDICLHRKNLRFDFPHHFSAATRG 47
          M +    V  + +    +  D+P         
Sbjct: 1  MSLSGPRVERLEVSAYTVPTDYPESDGTLQWD 32


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:389-434,A:733-794)
          Length = 108

 Score = 26.3 bits (58), Expect = 5.3
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 30  RKNLRFDFP 38
           R N++ DFP
Sbjct: 100 RANIQLDFP 108


>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding
           protein, gene regulation; 2.90A {Aquifex aeolicus VF5}
           (A:319-349,A:463-492)
          Length = 61

 Score = 25.8 bits (56), Expect = 6.1
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 156 LTHQFHKKNSNLKNALLN--QKIVAGIGNI 183
           L   F KKN NLK  LLN  ++++A  GNI
Sbjct: 24  LCRPFVKKNENLKFVLLNVAEQVLAKTGNI 53


>1ivd_A Influenza A subtype N2 neuraminidase; hydrolase
           (O-glycosyl); HET: NAG BMA FUL MAN FUC ST1; 1.90A
           {Influenza a virus} (A:1-96,A:321-388)
          Length = 164

 Score = 25.6 bits (56), Expect = 9.0
 Identities = 7/16 (43%), Positives = 8/16 (50%)

Query: 75  GMSGSFIIEHTSCAKP 90
           G SG F +E  SC   
Sbjct: 100 GYSGIFSVEGKSCINR 115


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.323    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,272,448
Number of extensions: 103001
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 29
Length of query: 289
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 201
Effective length of database: 1,981,209
Effective search space: 398223009
Effective search space used: 398223009
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)