RPSBLAST alignment of GI: 254780625 and protein with PDBid: 1k82
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Length = 268
Score = 231 bits (590), Expect = 1e-61
Identities = 104/288 (36%), Positives = 145/288 (50%), Gaps = 20/288 (6%)
Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61
PELPEVE RR + + T+ + LR+ + ++ V RRAKYLL
Sbjct: 1 PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEI-YRLSDQPVLSVQRRAKYLL 59
Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121
+EL II+HLGMSGS I +H+HV + ++N + Y DPRR
Sbjct: 60 LELPEG-WIIIHLGMSGSLRILPEEL----PPEKHDHVDLVMSNGK-----VLRYTDPRR 109
Query: 122 FGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIG 181
FG + + L LGPEP + FN YL + KK + +K L++ K+V G+G
Sbjct: 110 FGAWLWTKE--LEGHNVLTHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVG 167
Query: 182 NIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVH 241
NIY E+L+ A + P R SL L + I+ VL+ +I+ GG++L+D++
Sbjct: 168 NIYASESLFAAGIHPDRLASSL------SLAECELLARVIKAVLLRSIEQGGTTLKDFLQ 221
Query: 242 IDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
DG GYF VYG+ GEPC CG I A R+TFYC CQK
Sbjct: 222 SDGKPGYFAQELQVYGRKGEPCR-VCGTPIVATKHAQRATFYCRQCQK 268