RPSBLAST alignment of GI: 254780625 and protein with PDBid: 3gpu
>3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* 3jr5_A* ... Length = 256
Score = 136 bits (342), Expect = 7e-33
Identities = 90/290 (31%), Positives = 132/290 (45%), Gaps = 36/290 (12%)
Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNL--RFDFPHHFSAATRGKKIIDVSRRAKY 59
PELPEVE IRR L+ ++ T+ D+ + N+ F+A G+ + + RR K+
Sbjct: 1 PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKF 60
Query: 60 LLIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDP 119
L L ++I HL M G + + H HV T+ + + Y D
Sbjct: 61 LKF-LLDRDALISHLRMEGRYAVASALE----PLEPHTHVVFCFTDGS-----ELRYRDV 110
Query: 120 RRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAG 179
R+FG M + + PPL LGPEP +F+ L + K ++K LL+ +VAG
Sbjct: 111 RKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAG 170
Query: 180 IGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDY 239
GNIYV E+L+RA + P R SL +L +E+ + +A+ G
Sbjct: 171 FGNIYVDESLFRAGILPGRPAASLSSKEI------ERLHEEMVATIGEAVMKG------- 217
Query: 240 VHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
Q+ VYG+ G PC CG I + V AGR T YC CQ+
Sbjct: 218 ----------QHHLYVYGRQGNPCK-RCGTPIEKTVVAGRGTHYCPRCQR 256