RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780625|ref|YP_003065038.1| formamidopyrimidine-DNA
glycosylase [Candidatus Liberibacter asiaticus str. psy62]
(289 letters)
>d1tdha2 b.113.1.1 (A:2-131) Endonuclease VIII-like 1 (NEIL1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 103 bits (257), Expect = 2e-23
Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 20/138 (14%)
Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61
PE PE+ + + + + + R S I S R K L
Sbjct: 1 PEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFES----SAYRISASARGKELR 56
Query: 62 IELEG---------NLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKY 112
+ L L+++ GMSGSF + P+H H+ +
Sbjct: 57 LILSPLPGAQPQQEPLALVFRFGMSGSFQLVPREEL-----PRHAHLRFYTAP--PGPRL 109
Query: 113 RVIYNDPRRFGFMDLVET 130
+ + D RRFG DL
Sbjct: 110 ALCFVDIRRFGRWDLGGK 127
>d1tdza2 b.113.1.1 (A:2-131) DNA repair protein MutM (Fpg)
{Lactococcus lactis [TaxId: 1358]}
Length = 130
Score = 97.5 bits (242), Expect = 1e-21
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 3 ELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLI 62
ELPEVE +RR L + + I + GK I +SRR KYL+
Sbjct: 1 ELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIF 60
Query: 63 ELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRF 122
E+ + +I HL M G + +H+H+T+ + ++IY D R+F
Sbjct: 61 EIGDDFRLISHLRMEGKY----RLATLDAPREKHDHLTMKFADG------QLIYADVRKF 110
Query: 123 GFMDLVETSLKYQYPPLRTL 142
G +L+ T Y + +
Sbjct: 111 GTWELISTDQVLPYFLKKKI 130
>d1k82a2 b.113.1.1 (A:1-128) DNA repair protein MutM (Fpg)
{Escherichia coli [TaxId: 562]}
Length = 128
Score = 93.2 bits (231), Expect = 2e-20
Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61
PELPEVE RR + + T+ + LR+ + + ++ V RRAKYLL
Sbjct: 1 PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRLS-DQPVLSVQRRAKYLL 59
Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121
+EL II+HLGMSGS I + + +H+HV + ++N + Y DPRR
Sbjct: 60 LELPEG-WIIIHLGMSGSLRILP----EELPPEKHDHVDLVMSNGK-----VLRYTDPRR 109
Query: 122 FGFMDLVE 129
FG +
Sbjct: 110 FGAWLWTK 117
>d1r2za2 b.113.1.1 (A:2-134) DNA repair protein MutM (Fpg) {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 133
Score = 92.5 bits (229), Expect = 4e-20
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNL--RFDFPHHFSAATRGKKIIDVSRRAKY 59
P+LPEVE IRR L+ ++ T+ D+ + N+ F+A G+ + + RR K+
Sbjct: 1 PQLPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKF 60
Query: 60 LLIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDP 119
L L ++I HL M G + + H HV T+ + + Y D
Sbjct: 61 LKF-LLDRDALISHLRMEGRYAVASALE----PLEPHTHVVFCFTDGS-----ELRYRDV 110
Query: 120 RRFGFMDLVETSLKYQYPPLRTL 142
R+FG M + + PPL L
Sbjct: 111 RKFGTMHVYAKEEADRRPPLAEL 133
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 94
Score = 91.6 bits (227), Expect = 8e-20
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRS 202
GPEP +F+ L + K ++K LL+Q +VAG GNIYV E+L+RA + P R S
Sbjct: 1 GPEPLSPAFSPAVLAERAVKTKRSVKALLLDQTVVAGFGNIYVDESLFRAGILPGRPAAS 60
Query: 203 LIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVH 241
L + +L +E+ + +A+ GGS++R YV+
Sbjct: 61 L------SSKEIERLHEEMVATIGEAVMKGGSTVRTYVN 93
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg)
{Lactococcus lactis [TaxId: 1358]}
Length = 88
Score = 88.4 bits (219), Expect = 6e-19
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRS 202
GPEP F+ + K +K LL Q +VAG+GNIYV E LW AK+ P ++T
Sbjct: 1 GPEPTYEDFDEKLFREKLRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQ 60
Query: 203 LIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSL 236
L + ++ L I ++L AI GGSS+
Sbjct: 61 L------IESSIHLLHDSIIEILQKAIKLGGSSI 88
>d1ee8a2 b.113.1.1 (A:1-121) DNA repair protein MutM (Fpg) {Thermus
thermophilus [TaxId: 274]}
Length = 121
Score = 87.9 bits (217), Expect = 8e-19
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61
PELPEVE RR L ++ T+ + R + +A G++I++V RR K+LL
Sbjct: 1 PELPEVETTRRRLRPLVLGQTLRQVVH-----RDPARYRNTALAEGRRILEVDRRGKFLL 55
Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121
LEG + ++ HLGM+G F +E H + L T + ++DPRR
Sbjct: 56 FALEGGVELVAHLGMTGGFRLEP---------TPHTRAALVLEGRT------LYFHDPRR 100
Query: 122 FGFMDLVETSLKYQYPPLRTL 142
FG + V + P L L
Sbjct: 101 FGRLFGVRRGDYREIPLLLRL 121
>d1k3xa2 b.113.1.1 (A:1-124) Endonuclease VIII {Escherichia coli
[TaxId: 562]}
Length = 124
Score = 87.4 bits (216), Expect = 1e-18
Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 16/139 (11%)
Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61
PE PE+ NL +K +TD+ L+ + + G+ + V R K LL
Sbjct: 1 PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLK-----TYQSQLIGQHVTHVETRGKALL 55
Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121
+L++ H + G + + T + + + V + + T ++Y
Sbjct: 56 THFSNDLTLYSHNQLYGVWRVVDTG--EEPQTTRVLRVKLQTADKT-----ILLY----S 104
Query: 122 FGFMDLVETSLKYQYPPLR 140
++++ +P L+
Sbjct: 105 ASDIEMLRPEQLTTHPFLQ 123
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg)
{Thermus thermophilus [TaxId: 274]}
Length = 89
Score = 86.5 bits (214), Expect = 2e-18
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRS 202
GPEP +F + LK LL+Q++ AG+GNIY EAL+RA+LSP R RS
Sbjct: 1 GPEPLSEAFAFPGFFRGLKESARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARS 60
Query: 203 LIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSL 236
L ++ +L + +++VL +A++ GGS+L
Sbjct: 61 L------TEEEARRLYRALREVLAEAVELGGSTL 88
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg)
{Escherichia coli [TaxId: 562]}
Length = 88
Score = 85.8 bits (212), Expect = 4e-18
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRS 202
GPEP + FN YL + KK + +K L++ K+V G+GNIY E+L+ A + P R S
Sbjct: 1 GPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASS 60
Query: 203 LIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSL 236
L L + I+ VL+ +I+ GG++L
Sbjct: 61 L------SLAECELLARVIKAVLLRSIEQGGTTL 88
>d1tdha1 a.156.1.2 (A:132-246) Endonuclease VIII-like 1 (NEIL1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 82.7 bits (204), Expect = 3e-17
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 17/111 (15%)
Query: 142 LGPEPADN--SFNAIYLTHQFHK-KNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIR 198
GP F L + K + + ALL+Q+ GIGN E L+R K+ P
Sbjct: 2 RGPCVLQEYQQFRESVLRNLADKAFDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFE 61
Query: 199 KTRSL--------------IQNNGTPKDILYKLIQEIQKVLIDAIDAGGSS 235
K RS+ + K L++ V + + GG
Sbjct: 62 KARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVPKEVVQLGGRG 112
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli
[TaxId: 562]}
Length = 89
Score = 82.7 bits (204), Expect = 3e-17
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 142 LGPEPADNSFNAIYLTHQFHKK---NSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIR 198
+GP+ D + + + N LL+Q +AG+GN E LW+ L+
Sbjct: 1 VGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNH 60
Query: 199 KTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGG 233
K + L L L + ++ + G
Sbjct: 61 KAKDL------NAAQLDALAHALLEIPRFSYATRG 89
>d1ee8a3 g.39.1.8 (A:211-266) DNA repair protein MutM (Fpg) {Thermus
thermophilus [TaxId: 274]}
Length = 56
Score = 80.2 bits (198), Expect = 2e-16
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 237 RDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
+ Y DG G FQ +VYG+ G PC CG+ + R V AGR T +C CQ
Sbjct: 2 QSYRQPDGLPGGFQTRHAVYGREGLPC-PACGRPVERRVVAGRGTHFCPTCQG 53
>d1r2za3 g.39.1.8 (A:229-274) DNA repair protein MutM (Fpg)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 46
Score = 76.3 bits (188), Expect = 3e-15
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 244 GSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
G G FQ+ VYG+ G PC CG I + V AGR T YC CQ+
Sbjct: 2 GEAGTFQHHLYVYGRQGNPC-KRCGTPIEKTVVAGRGTHYCPRCQR 46
>d1k82a3 g.39.1.8 (A:225-268) DNA repair protein MutM (Fpg)
{Escherichia coli [TaxId: 562]}
Length = 44
Score = 75.1 bits (185), Expect = 6e-15
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 247 GYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
GYF VYG+ GEPC CG I A R+TFYC CQK
Sbjct: 3 GYFAQELQVYGRKGEPCR-VCGTPIVATKHAQRATFYCRQCQK 44
>d1tdza3 g.39.1.8 (A:225-271) DNA repair protein MutM (Fpg)
{Lactococcus lactis [TaxId: 1358]}
Length = 47
Score = 74.7 bits (184), Expect = 9e-15
Identities = 25/46 (54%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 244 GSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
GS G QN VYGKTGE C S CG I++I AGR T +C CQ+
Sbjct: 2 GSTGKMQNELQVYGKTGEKC-SRCGAEIQKIKVAGRGTHFCPVCQQ 46
>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli
[TaxId: 562]}
Length = 40
Score = 62.0 bits (151), Expect = 6e-11
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 253 FSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQ 288
F V+ + GEPC CG +I + + R ++C CQ
Sbjct: 5 FKVFHRDGEPCE-RCGSIIEKTTLSSRPFYWCPGCQ 39
>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle
domain {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Length = 78
Score = 54.9 bits (132), Expect = 7e-09
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRS 202
P P + + + + IG+ + L A L P +K ++
Sbjct: 2 KPHP--YGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKN 59
Query: 203 LIQNNGTPKDILYKLIQEIQKVL 225
L T ++I +L++ +K
Sbjct: 60 L-----TEEEIT-RLVETFKKYE 76
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
9606]}
Length = 395
Score = 26.7 bits (58), Expect = 2.5
Identities = 6/42 (14%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 190 WRAKLSPIRKTRS-LIQNNGTPKDILYKLIQEIQKVLIDAID 230
W + PI + R L+ ++ ++ ++ +++A +
Sbjct: 304 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFE 345
>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase)
{Thermus aquaticus [TaxId: 271]}
Length = 305
Score = 25.8 bits (56), Expect = 4.4
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 1/99 (1%)
Query: 138 PLRTLGPEPADNSFNAIYLTHQFHKKN-SNLKNALLNQKIVAGIGNIYVCEALWRAKLSP 196
PL G + + + + + I GI I L A +
Sbjct: 204 PLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDTDLRLAFTAL 263
Query: 197 IRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSS 235
IR+ + P+ L + +++V+ ++ GS
Sbjct: 264 IREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV 302
>d1dhkb_ b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also arcelin
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 204
Score = 25.5 bits (55), Expect = 5.5
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 100 TISLTNNTNTKKYRVIYNDPRRF 122
+ L+ N+ R Y+ P +
Sbjct: 29 NLQLSYNSYDSMSRAFYSAPIQI 51
>g2ltn.1 b.29.1.1 (A:,B:) Legume lectin {Garden pea (Pisum sativum)
[TaxId: 3888]}
Length = 229
Score = 25.5 bits (55), Expect = 5.5
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 100 TISLTNNTNTKKYRVIYNDPRRF 122
++LT R +Y+ P
Sbjct: 30 KLTLTKAVKNTVGRALYSSPIHI 52
>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Candida albicans [TaxId:
5476]}
Length = 322
Score = 25.1 bits (54), Expect = 6.6
Identities = 9/47 (19%), Positives = 18/47 (38%)
Query: 204 IQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQ 250
I +N +++ +++ I G S +RD+ D Q
Sbjct: 205 ISHNWGEFYQVHQYLRQFFPDTIIQYFGGHSHIRDFTVFDSLSTGLQ 251
>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human
papillomavirus type 16 [TaxId: 333760]}
Length = 455
Score = 24.6 bits (54), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 90 PIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMD 126
PIK P +N + + + + +R+ DP +FGF D
Sbjct: 32 PIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPD 68
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc
6803 [TaxId: 1143]}
Length = 204
Score = 25.0 bits (53), Expect = 8.8
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 18 MKNMTVTDICLHRKNLRF-DFPHHFSAATRGKKII 51
MK++ T + R +LR D A G I
Sbjct: 1 MKHVPPTVLVWFRNDLRLHDHEPLHRALKSGLAIT 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.413
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,120,818
Number of extensions: 52819
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 28
Length of query: 289
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,254,276
Effective search space: 257126580
Effective search space used: 257126580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)