RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780625|ref|YP_003065038.1| formamidopyrimidine-DNA glycosylase [Candidatus Liberibacter asiaticus str. psy62] (289 letters) >d1tdha2 b.113.1.1 (A:2-131) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]} Length = 130 Score = 103 bits (257), Expect = 2e-23 Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 20/138 (14%) Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61 PE PE+ + + + + + R S I S R K L Sbjct: 1 PEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFES----SAYRISASARGKELR 56 Query: 62 IELEG---------NLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKY 112 + L L+++ GMSGSF + P+H H+ + Sbjct: 57 LILSPLPGAQPQQEPLALVFRFGMSGSFQLVPREEL-----PRHAHLRFYTAP--PGPRL 109 Query: 113 RVIYNDPRRFGFMDLVET 130 + + D RRFG DL Sbjct: 110 ALCFVDIRRFGRWDLGGK 127 >d1tdza2 b.113.1.1 (A:2-131) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]} Length = 130 Score = 97.5 bits (242), Expect = 1e-21 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 10/140 (7%) Query: 3 ELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLI 62 ELPEVE +RR L + + I + GK I +SRR KYL+ Sbjct: 1 ELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIF 60 Query: 63 ELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRF 122 E+ + +I HL M G + +H+H+T+ + ++IY D R+F Sbjct: 61 EIGDDFRLISHLRMEGKY----RLATLDAPREKHDHLTMKFADG------QLIYADVRKF 110 Query: 123 GFMDLVETSLKYQYPPLRTL 142 G +L+ T Y + + Sbjct: 111 GTWELISTDQVLPYFLKKKI 130 >d1k82a2 b.113.1.1 (A:1-128) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} Length = 128 Score = 93.2 bits (231), Expect = 2e-20 Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 11/128 (8%) Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61 PELPEVE RR + + T+ + LR+ + + ++ V RRAKYLL Sbjct: 1 PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRLS-DQPVLSVQRRAKYLL 59 Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121 +EL II+HLGMSGS I + + +H+HV + ++N + Y DPRR Sbjct: 60 LELPEG-WIIIHLGMSGSLRILP----EELPPEKHDHVDLVMSNGK-----VLRYTDPRR 109 Query: 122 FGFMDLVE 129 FG + Sbjct: 110 FGAWLWTK 117 >d1r2za2 b.113.1.1 (A:2-134) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]} Length = 133 Score = 92.5 bits (229), Expect = 4e-20 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 12/143 (8%) Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNL--RFDFPHHFSAATRGKKIIDVSRRAKY 59 P+LPEVE IRR L+ ++ T+ D+ + N+ F+A G+ + + RR K+ Sbjct: 1 PQLPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKF 60 Query: 60 LLIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDP 119 L L ++I HL M G + + H HV T+ + + Y D Sbjct: 61 LKF-LLDRDALISHLRMEGRYAVASALE----PLEPHTHVVFCFTDGS-----ELRYRDV 110 Query: 120 RRFGFMDLVETSLKYQYPPLRTL 142 R+FG M + + PPL L Sbjct: 111 RKFGTMHVYAKEEADRRPPLAEL 133 >d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]} Length = 94 Score = 91.6 bits (227), Expect = 8e-20 Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 6/99 (6%) Query: 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRS 202 GPEP +F+ L + K ++K LL+Q +VAG GNIYV E+L+RA + P R S Sbjct: 1 GPEPLSPAFSPAVLAERAVKTKRSVKALLLDQTVVAGFGNIYVDESLFRAGILPGRPAAS 60 Query: 203 LIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVH 241 L + +L +E+ + +A+ GGS++R YV+ Sbjct: 61 L------SSKEIERLHEEMVATIGEAVMKGGSTVRTYVN 93 >d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]} Length = 88 Score = 88.4 bits (219), Expect = 6e-19 Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 6/94 (6%) Query: 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRS 202 GPEP F+ + K +K LL Q +VAG+GNIYV E LW AK+ P ++T Sbjct: 1 GPEPTYEDFDEKLFREKLRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQ 60 Query: 203 LIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSL 236 L + ++ L I ++L AI GGSS+ Sbjct: 61 L------IESSIHLLHDSIIEILQKAIKLGGSSI 88 >d1ee8a2 b.113.1.1 (A:1-121) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Length = 121 Score = 87.9 bits (217), Expect = 8e-19 Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 20/141 (14%) Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61 PELPEVE RR L ++ T+ + R + +A G++I++V RR K+LL Sbjct: 1 PELPEVETTRRRLRPLVLGQTLRQVVH-----RDPARYRNTALAEGRRILEVDRRGKFLL 55 Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121 LEG + ++ HLGM+G F +E H + L T + ++DPRR Sbjct: 56 FALEGGVELVAHLGMTGGFRLEP---------TPHTRAALVLEGRT------LYFHDPRR 100 Query: 122 FGFMDLVETSLKYQYPPLRTL 142 FG + V + P L L Sbjct: 101 FGRLFGVRRGDYREIPLLLRL 121 >d1k3xa2 b.113.1.1 (A:1-124) Endonuclease VIII {Escherichia coli [TaxId: 562]} Length = 124 Score = 87.4 bits (216), Expect = 1e-18 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 16/139 (11%) Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61 PE PE+ NL +K +TD+ L+ + + G+ + V R K LL Sbjct: 1 PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLK-----TYQSQLIGQHVTHVETRGKALL 55 Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121 +L++ H + G + + T + + + V + + T ++Y Sbjct: 56 THFSNDLTLYSHNQLYGVWRVVDTG--EEPQTTRVLRVKLQTADKT-----ILLY----S 104 Query: 122 FGFMDLVETSLKYQYPPLR 140 ++++ +P L+ Sbjct: 105 ASDIEMLRPEQLTTHPFLQ 123 >d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Length = 89 Score = 86.5 bits (214), Expect = 2e-18 Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 6/94 (6%) Query: 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRS 202 GPEP +F + LK LL+Q++ AG+GNIY EAL+RA+LSP R RS Sbjct: 1 GPEPLSEAFAFPGFFRGLKESARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARS 60 Query: 203 LIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSL 236 L ++ +L + +++VL +A++ GGS+L Sbjct: 61 L------TEEEARRLYRALREVLAEAVELGGSTL 88 >d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} Length = 88 Score = 85.8 bits (212), Expect = 4e-18 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%) Query: 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRS 202 GPEP + FN YL + KK + +K L++ K+V G+GNIY E+L+ A + P R S Sbjct: 1 GPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASS 60 Query: 203 LIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSL 236 L L + I+ VL+ +I+ GG++L Sbjct: 61 L------SLAECELLARVIKAVLLRSIEQGGTTL 88 >d1tdha1 a.156.1.2 (A:132-246) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]} Length = 115 Score = 82.7 bits (204), Expect = 3e-17 Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 17/111 (15%) Query: 142 LGPEPADN--SFNAIYLTHQFHK-KNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIR 198 GP F L + K + + ALL+Q+ GIGN E L+R K+ P Sbjct: 2 RGPCVLQEYQQFRESVLRNLADKAFDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFE 61 Query: 199 KTRSL--------------IQNNGTPKDILYKLIQEIQKVLIDAIDAGGSS 235 K RS+ + K L++ V + + GG Sbjct: 62 KARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVPKEVVQLGGRG 112 >d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]} Length = 89 Score = 82.7 bits (204), Expect = 3e-17 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 9/95 (9%) Query: 142 LGPEPADNSFNAIYLTHQFHKK---NSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIR 198 +GP+ D + + + N LL+Q +AG+GN E LW+ L+ Sbjct: 1 VGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNH 60 Query: 199 KTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGG 233 K + L L L + ++ + G Sbjct: 61 KAKDL------NAAQLDALAHALLEIPRFSYATRG 89 >d1ee8a3 g.39.1.8 (A:211-266) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Length = 56 Score = 80.2 bits (198), Expect = 2e-16 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 237 RDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 + Y DG G FQ +VYG+ G PC CG+ + R V AGR T +C CQ Sbjct: 2 QSYRQPDGLPGGFQTRHAVYGREGLPC-PACGRPVERRVVAGRGTHFCPTCQG 53 >d1r2za3 g.39.1.8 (A:229-274) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]} Length = 46 Score = 76.3 bits (188), Expect = 3e-15 Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 244 GSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 G G FQ+ VYG+ G PC CG I + V AGR T YC CQ+ Sbjct: 2 GEAGTFQHHLYVYGRQGNPC-KRCGTPIEKTVVAGRGTHYCPRCQR 46 >d1k82a3 g.39.1.8 (A:225-268) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} Length = 44 Score = 75.1 bits (185), Expect = 6e-15 Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 247 GYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 GYF VYG+ GEPC CG I A R+TFYC CQK Sbjct: 3 GYFAQELQVYGRKGEPCR-VCGTPIVATKHAQRATFYCRQCQK 44 >d1tdza3 g.39.1.8 (A:225-271) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]} Length = 47 Score = 74.7 bits (184), Expect = 9e-15 Identities = 25/46 (54%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 244 GSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 GS G QN VYGKTGE C S CG I++I AGR T +C CQ+ Sbjct: 2 GSTGKMQNELQVYGKTGEKC-SRCGAEIQKIKVAGRGTHFCPVCQQ 46 >d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli [TaxId: 562]} Length = 40 Score = 62.0 bits (151), Expect = 6e-11 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 253 FSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQ 288 F V+ + GEPC CG +I + + R ++C CQ Sbjct: 5 FKVFHRDGEPCE-RCGSIIEKTTLSSRPFYWCPGCQ 39 >d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 78 Score = 54.9 bits (132), Expect = 7e-09 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 8/83 (9%) Query: 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRS 202 P P + + + + IG+ + L A L P +K ++ Sbjct: 2 KPHP--YGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKN 59 Query: 203 LIQNNGTPKDILYKLIQEIQKVL 225 L T ++I +L++ +K Sbjct: 60 L-----TEEEIT-RLVETFKKYE 76 >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395 Score = 26.7 bits (58), Expect = 2.5 Identities = 6/42 (14%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 190 WRAKLSPIRKTRS-LIQNNGTPKDILYKLIQEIQKVLIDAID 230 W + PI + R L+ ++ ++ ++ +++A + Sbjct: 304 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFE 345 >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} Length = 305 Score = 25.8 bits (56), Expect = 4.4 Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 1/99 (1%) Query: 138 PLRTLGPEPADNSFNAIYLTHQFHKKN-SNLKNALLNQKIVAGIGNIYVCEALWRAKLSP 196 PL G + + + + + I GI I L A + Sbjct: 204 PLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDTDLRLAFTAL 263 Query: 197 IRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSS 235 IR+ + P+ L + +++V+ ++ GS Sbjct: 264 IREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV 302 >d1dhkb_ b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 204 Score = 25.5 bits (55), Expect = 5.5 Identities = 5/23 (21%), Positives = 10/23 (43%) Query: 100 TISLTNNTNTKKYRVIYNDPRRF 122 + L+ N+ R Y+ P + Sbjct: 29 NLQLSYNSYDSMSRAFYSAPIQI 51 >g2ltn.1 b.29.1.1 (A:,B:) Legume lectin {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 229 Score = 25.5 bits (55), Expect = 5.5 Identities = 5/23 (21%), Positives = 9/23 (39%) Query: 100 TISLTNNTNTKKYRVIYNDPRRF 122 ++LT R +Y+ P Sbjct: 30 KLTLTKAVKNTVGRALYSSPIHI 52 >d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Candida albicans [TaxId: 5476]} Length = 322 Score = 25.1 bits (54), Expect = 6.6 Identities = 9/47 (19%), Positives = 18/47 (38%) Query: 204 IQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQ 250 I +N +++ +++ I G S +RD+ D Q Sbjct: 205 ISHNWGEFYQVHQYLRQFFPDTIIQYFGGHSHIRDFTVFDSLSTGLQ 251 >d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human papillomavirus type 16 [TaxId: 333760]} Length = 455 Score = 24.6 bits (54), Expect = 8.8 Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 90 PIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMD 126 PIK P +N + + + + +R+ DP +FGF D Sbjct: 32 PIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPD 68 >d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 204 Score = 25.0 bits (53), Expect = 8.8 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%) Query: 18 MKNMTVTDICLHRKNLRF-DFPHHFSAATRGKKII 51 MK++ T + R +LR D A G I Sbjct: 1 MKHVPPTVLVWFRNDLRLHDHEPLHRALKSGLAIT 35 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.323 0.138 0.413 Gapped Lambda K H 0.267 0.0507 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,120,818 Number of extensions: 52819 Number of successful extensions: 186 Number of sequences better than 10.0: 1 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 28 Length of query: 289 Length of database: 2,407,596 Length adjustment: 84 Effective length of query: 205 Effective length of database: 1,254,276 Effective search space: 257126580 Effective search space used: 257126580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (24.3 bits)