Query         gi|254780626|ref|YP_003065039.1| 30S ribosomal protein S20 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 90
No_of_seqs    107 out of 1206
Neff          5.5 
Searched_HMMs 39220
Date          Sun May 29 21:11:50 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780626.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK00239 rpsT 30S ribosomal pr 100.0 6.7E-28 1.7E-32  187.4  12.7   88    1-88      1-88  (88)
  2 COG0268 RpsT Ribosomal protein  99.9 3.6E-27 9.1E-32  183.0  12.1   88    1-88      1-88  (88)
  3 pfam01649 Ribosomal_S20p Ribos  99.9 1.2E-26 3.2E-31  179.8  11.5   84    2-85      1-84  (84)
  4 CHL00102 rps20 ribosomal prote  99.9 1.1E-25 2.8E-30  174.1  11.8   86    1-86      1-91  (93)
  5 TIGR00029 S20 ribosomal protei  99.9 5.7E-26 1.4E-30  175.8   8.9   87    1-87      1-94  (94)
  6 PTZ00151 translationally contr  39.5      29 0.00074   15.5   6.4   39   22-60     87-125 (173)
  7 pfam10938 YfdX YfdX protein. Y  34.2      35  0.0009   15.0   4.7   32   33-64      7-38  (155)
  8 smart00668 CTLH C-terminal to   34.2      35  0.0009   15.0   3.8   31   32-62      5-35  (58)
  9 pfam00838 TCTP Translationally  33.7      36 0.00091   15.0   6.2   38   22-59     83-120 (166)
 10 TIGR00683 nanA N-acetylneurami  30.2      41   0.001   14.6   4.3   36   33-68    215-250 (294)
 11 PRK10316 hypothetical protein;  28.8      43  0.0011   14.5   3.5   30   34-63     60-89  (209)
 12 COG1849 Uncharacterized protei  27.6      46  0.0012   14.3   5.8   48   22-69     35-82  (90)
 13 pfam03194 LUC7 LUC7 N_terminus  26.5      48  0.0012   14.2   5.0   37   22-58    126-162 (252)
 14 KOG0796 consensus               26.2      48  0.0012   14.2   4.7   34   26-59    129-162 (319)
 15 PRK10564 maltose regulon perip  24.8      51  0.0013   14.0   3.5   24   34-57    263-286 (303)
 16 TIGR00823 EIIA-LAC PTS system,  23.9      53  0.0014   13.9   5.0   34   28-61     17-50  (99)
 17 pfam07148 MalM Maltose operon   21.7      59  0.0015   13.7   4.1   24   34-57    239-262 (279)
 18 pfam10925 DUF2680 Protein of u  20.8      62  0.0016   13.5   4.4   33   55-87     21-53  (59)

No 1  
>PRK00239 rpsT 30S ribosomal protein S20; Reviewed
Probab=99.95  E-value=6.7e-28  Score=187.42  Aligned_cols=88  Identities=44%  Similarity=0.583  Sum_probs=86.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             96898999999999999999999999999999999999960898999999999999999998658861669999999999
Q gi|254780626|r    1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLS   80 (90)
Q Consensus         1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~   80 (90)
                      ||||+||+||+||+++++++|++++|.+||++|+|+.+|++||.+++.++|+.+++.||+++++||||+|+|+|++|||+
T Consensus         1 Man~kSA~Kr~rq~~krr~~N~~~ks~~kT~iKk~~~ai~~~d~~~a~~~~~~~~s~iDkaa~kgiihkN~AaRkKSrL~   80 (88)
T PRK00239          1 MANIKSAKKRIRQNEKRRLRNKSRKSRLRTAIKKVRAAIEAGDKEAAEEALKAAQSKLDKAASKGVIHKNKAARKKSRLA   80 (88)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             99808889999999999999999999999999999999984899999999999999999998669876315889999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999842
Q gi|254780626|r   81 KRLKGILT   88 (90)
Q Consensus        81 ~~v~~~~~   88 (90)
                      ++||+++.
T Consensus        81 k~ln~l~~   88 (88)
T PRK00239         81 AKVNALAA   88 (88)
T ss_pred             HHHHHHCC
T ss_conf             99977639


No 2  
>COG0268 RpsT Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]
Probab=99.95  E-value=3.6e-27  Score=183.05  Aligned_cols=88  Identities=43%  Similarity=0.568  Sum_probs=86.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             96898999999999999999999999999999999999960898999999999999999998658861669999999999
Q gi|254780626|r    1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLS   80 (90)
Q Consensus         1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~   80 (90)
                      |||++||+||++|+++++++|.+++|++||+||+|+.+|+.||.+.+.++|..+++.||+++++||||+|+|+|++|||+
T Consensus         1 MAN~~SA~KR~r~~~krr~rN~~~kS~~rT~iKk~~~ai~~gd~~~A~~~l~~a~~~idkaa~KGvihkN~AaR~kSRLa   80 (88)
T COG0268           1 MANIKSAKKRARQSEKRRLRNKSRKSALRTAIKKVEAAIEAGDKEAAKAALKEAQKKIDKAASKGVIHKNKAARKKSRLA   80 (88)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             99707789999999999998599999999999999999984779999999999999999998728634338888999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999842
Q gi|254780626|r   81 KRLKGILT   88 (90)
Q Consensus        81 ~~v~~~~~   88 (90)
                      ..++++..
T Consensus        81 ~~~~~~~~   88 (88)
T COG0268          81 AKLNKLAA   88 (88)
T ss_pred             HHHHHHCC
T ss_conf             99865349


No 3  
>pfam01649 Ribosomal_S20p Ribosomal protein S20. Bacterial ribosomal protein S20 interacts with 16S rRNA.
Probab=99.94  E-value=1.2e-26  Score=179.79  Aligned_cols=84  Identities=44%  Similarity=0.576  Sum_probs=82.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             68989999999999999999999999999999999999608989999999999999999986588616699999999999
Q gi|254780626|r    2 ANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLSK   81 (90)
Q Consensus         2 an~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~~   81 (90)
                      |||+||+||+||++++|++|++++|.|||++|+|+.+|++||.++|.++|+.+++.||+++++||||+|+|+|++|||+.
T Consensus         1 AN~kSA~KR~rq~~krr~~N~~~kS~~rT~iKkv~~ai~~gd~~~A~~~l~~a~~~iDkaa~KGiiHkN~AARkkSRL~~   80 (84)
T pfam01649         1 ANIKSAKKRIRQNEKRRLRNKSYKSKMRTLIKKVREAIEAGEKDKAKEALKEVQSKIDKAAKKGVIHKNTAARKKSRLAA   80 (84)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             97188999999999999999999999999999999999858999999999999999999974586643068889999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780626|r   82 RLKG   85 (90)
Q Consensus        82 ~v~~   85 (90)
                      .||+
T Consensus        81 ~vnK   84 (84)
T pfam01649        81 ILNK   84 (84)
T ss_pred             HHCC
T ss_conf             8629


No 4  
>CHL00102 rps20 ribosomal protein S20
Probab=99.93  E-value=1.1e-25  Score=174.10  Aligned_cols=86  Identities=35%  Similarity=0.370  Sum_probs=83.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             96898999999999999999999999999999999999960-----8989999999999999999986588616699999
Q gi|254780626|r    1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITF-----GKIEEATEACRKAESVIQKAKSKGIFHGNAASRK   75 (90)
Q Consensus         1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~-----~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRk   75 (90)
                      |||++||+||++++|++|++|++|+|.+||++|+|..+++.     +|.+.+...++.+||.||+|+++||||+|+++|+
T Consensus         1 MAN~kSa~KRi~~~ErnRlrNkayKS~vrT~~Kk~~~a~e~~~~~~~~~~~~~~~l~~a~s~IDKAVkkGvlHkNtaArk   80 (93)
T CHL00102          1 MANNKSAIKRIQISERNRLRNRAYKSVVKTLTKKYLKDLENYKNSNNNKEKLQLLLSIVYSKIDKAVKKGVFHKNTAARK   80 (93)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf             99708789999999999998799999999999999999998723898199999999999999999987288677608889


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999998
Q gi|254780626|r   76 VSRLSKRLKGI   86 (90)
Q Consensus        76 KSrL~~~v~~~   86 (90)
                      ||||+..++..
T Consensus        81 KSrLa~~~k~~   91 (93)
T CHL00102         81 KSKLAKALKIS   91 (93)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999998774


No 5  
>TIGR00029 S20 ribosomal protein S20; InterPro: IPR002583   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .   This family consists of bacterial (and chloroplast) examples of the ribosomal small subunit protein S20. Bacterial ribosomal protein S20 forms part of the 30S ribosomal subunit, and interacts with 16S rRNA.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.
Probab=99.93  E-value=5.7e-26  Score=175.84  Aligned_cols=87  Identities=39%  Similarity=0.538  Sum_probs=85.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             96898999999999999999999999999999999999960898-------99999999999999999865886166999
Q gi|254780626|r    1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKI-------EEATEACRKAESVIQKAKSKGIFHGNAAS   73 (90)
Q Consensus         1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~-------~~a~~~~~~~~s~lDka~kkgiihkn~As   73 (90)
                      ||||+||+||++|+++++++|.+++|.|||.||+|...|+.|+.       ++|.+.|..+++.||++|.+||||+|+|+
T Consensus         1 maNiKSA~KR~~q~~kr~~~N~~~Ks~~kT~iK~~~~~v~~~~~dPnPekl~~A~~~~~~~~k~~D~~a~kgiihkN~Aa   80 (94)
T TIGR00029         1 MANIKSAEKRIRQNIKRRLRNKSYKSKLKTIIKKVYASVAAGEKDPNPEKLDKAQEALKEAAKKIDKAARKGIIHKNKAA   80 (94)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             97410367778887873104730555987899999999851267998423899999999987886189850730233476


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999984
Q gi|254780626|r   74 RKVSRLSKRLKGIL   87 (90)
Q Consensus        74 RkKSrL~~~v~~~~   87 (90)
                      |+||||+..|+++.
T Consensus        81 R~KSrL~~~l~k~~   94 (94)
T TIGR00029        81 RKKSRLAAQLNKLA   94 (94)
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             79999999986209


No 6  
>PTZ00151 translationally controlled tumor protein; Provisional
Probab=39.53  E-value=29  Score=15.53  Aligned_cols=39  Identities=10%  Similarity=0.158  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999608989999999999999999
Q gi|254780626|r   22 KSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK   60 (90)
Q Consensus        22 ~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDk   60 (90)
                      .++++-||.++|++..-+++++++.+..+-..++..+-+
T Consensus        87 k~y~~yiK~YmK~v~~kLee~~perV~~Fk~~a~~~vK~  125 (173)
T PTZ00151         87 KEYSSYIKKYIQRIVAYLEEKNPDRVEPFKTKAQPFVKH  125 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999998632988999999988999999


No 7  
>pfam10938 YfdX YfdX protein. YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in E. coli.
Probab=34.19  E-value=35  Score=15.02  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=20.9

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999996089899999999999999999865
Q gi|254780626|r   33 RHANEAITFGKIEEATEACRKAESVIQKAKSK   64 (90)
Q Consensus        33 Kk~~~ai~~~d~~~a~~~~~~~~s~lDka~kk   64 (90)
                      .....+|..|+.+.|...+..+...|+.+...
T Consensus         7 ~~Ar~ai~~g~~~~A~~~l~~A~~~l~~~~a~   38 (155)
T pfam10938         7 QQARAALDNGKTEQAKKALERATGLLEAALAD   38 (155)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999998799899999999999889988631


No 8  
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=34.15  E-value=35  Score=15.01  Aligned_cols=31  Identities=19%  Similarity=0.165  Sum_probs=26.0

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999960898999999999999999998
Q gi|254780626|r   32 MRHANEAITFGKIEEATEACRKAESVIQKAK   62 (90)
Q Consensus        32 iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~   62 (90)
                      ...+..+|..||.+.|..++...+..+...-
T Consensus         5 r~~i~~~i~~G~~~~Al~~~~~~~~~l~~~~   35 (58)
T smart00668        5 RKRIRELILKGDWDEALEWLSSLKPPLLERN   35 (58)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHCHHHHHCC
T ss_conf             9999999995999999999998598988529


No 9  
>pfam00838 TCTP Translationally controlled tumour protein.
Probab=33.69  E-value=36  Score=14.97  Aligned_cols=38  Identities=11%  Similarity=0.206  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999960898999999999999999
Q gi|254780626|r   22 KSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQ   59 (90)
Q Consensus        22 ~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lD   59 (90)
                      .+|++-+|.++|++..-++..+++....+-..++..+-
T Consensus        83 k~y~~yiK~YmK~v~~~L~e~~pe~V~~Fk~~a~~~vK  120 (166)
T pfam00838        83 KSFKTYIKGYMKAVKAKLQEENPERVSLFKKNIQGWVK  120 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf             99999999999999998765196789999998899999


No 10 
>TIGR00683 nanA N-acetylneuraminate lyase; InterPro: IPR005264    N-acetylneuraminate lyase catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetyl-D-mannosamine. The enzyme plays an important role in the regulation of sialic acid metabolism in bacteria..
Probab=30.24  E-value=41  Score=14.62  Aligned_cols=36  Identities=17%  Similarity=0.264  Sum_probs=32.1

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf             999999960898999999999999999998658861
Q gi|254780626|r   33 RHANEAITFGKIEEATEACRKAESVIQKAKSKGIFH   68 (90)
Q Consensus        33 Kk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiih   68 (90)
                      +.+.+++.+||..+|.+.=.+++.+||-..+.|++.
T Consensus       215 ~~I~~~~K~G~~~~A~~~Q~~~N~~I~~~~~~G~y~  250 (294)
T TIGR00683       215 RQIVKLLKEGDLAEALKLQTVTNDLIDLLLKTGLYL  250 (294)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             889998607877899999888889999998504478


No 11 
>PRK10316 hypothetical protein; Provisional
Probab=28.77  E-value=43  Score=14.46  Aligned_cols=30  Identities=23%  Similarity=0.294  Sum_probs=25.0

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999608989999999999999999986
Q gi|254780626|r   34 HANEAITFGKIEEATEACRKAESVIQKAKS   63 (90)
Q Consensus        34 k~~~ai~~~d~~~a~~~~~~~~s~lDka~k   63 (90)
                      -.+.+|-.|+.+.|..++..+...||++..
T Consensus        60 lAR~Aif~G~~~~Ak~Ll~~A~~~L~~a~~   89 (209)
T PRK10316         60 VARLALFHGDPEKAKELTNEASALLSDDST   89 (209)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             999998659977889999999999864223


No 12 
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.59  E-value=46  Score=14.34  Aligned_cols=48  Identities=17%  Similarity=0.147  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             999999999999999999608989999999999999999986588616
Q gi|254780626|r   22 KSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHG   69 (90)
Q Consensus        22 ~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihk   69 (90)
                      ..+-...+.+...-.-..+.||.-.|...++=+.-.||-.+.=|+++-
T Consensus        35 e~~~~ma~~Y~~Dakyf~ekGD~vtAfa~~sYa~g~lDag~~lGv~d~   82 (90)
T COG1849          35 EDFVDMAESYFEDAKYFLEKGDYVTAFAALSYAHGWLDAGVRLGVFDV   82 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             999999999998889999847689999999999999998888625777


No 13 
>pfam03194 LUC7 LUC7 N_terminus. This family contains the N terminal region of several LUC7 protein homologues and only contains eukaryotic proteins. LUC7 has been shown to be a U1 snRNA associated protein with a role in splice site recognition. The family also contains human and mouse LUC7 like (LUC7L) proteins and human cisplatin resistance-associated overexpressed protein (CROP).
Probab=26.45  E-value=48  Score=14.21  Aligned_cols=37  Identities=16%  Similarity=0.233  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999996089899999999999999
Q gi|254780626|r   22 KSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVI   58 (90)
Q Consensus        22 ~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~l   58 (90)
                      ...-..|...+.+++.+-+.|+.++|+.++..+..+-
T Consensus       126 ~~l~~~I~~ll~e~E~LGe~G~VdeA~~~~~~~e~Lk  162 (252)
T pfam03194       126 AELDEEIGKLLAEAEALGEEGKVDEAMKLMKEVEELK  162 (252)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             9999999999999999986799999999999999999


No 14 
>KOG0796 consensus
Probab=26.23  E-value=48  Score=14.19  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999960898999999999999999
Q gi|254780626|r   26 SSVRSFMRHANEAITFGKIEEATEACRKAESVIQ   59 (90)
Q Consensus        26 s~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lD   59 (90)
                      -.|...+.+++.+.++|+.++|++++..+..+--
T Consensus       129 e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~  162 (319)
T KOG0796         129 EKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKA  162 (319)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             9999999999997626888999999999999999


No 15 
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=24.77  E-value=51  Score=14.03  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=17.2

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             999999608989999999999999
Q gi|254780626|r   34 HANEAITFGKIEEATEACRKAESV   57 (90)
Q Consensus        34 k~~~ai~~~d~~~a~~~~~~~~s~   57 (90)
                      .++.||++||.+.|..++.++..+
T Consensus       263 aI~~AVk~~DI~KAL~LldEAe~L  286 (303)
T PRK10564        263 AIKDAVKKGDVDKALKLLNEAERL  286 (303)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             999999759999999999999985


No 16 
>TIGR00823 EIIA-LAC PTS system, lactose-specific IIa component; InterPro: IPR003188   The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) ,  is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars.   The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII).    The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site.    An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , .    The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion . Separation into subunits is thought to occur after phosphorylation. ; GO: 0005351 sugar:hydrogen ion symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane.
Probab=23.95  E-value=53  Score=13.93  Aligned_cols=34  Identities=26%  Similarity=0.237  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999996089899999999999999999
Q gi|254780626|r   28 VRSFMRHANEAITFGKIEEATEACRKAESVIQKA   61 (90)
Q Consensus        28 ~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka   61 (90)
                      -|+..=....+-+.||.++|..++..+...|..|
T Consensus        17 aRS~a~eAl~AA~~Gdf~~A~~l~~~a~~~l~~A   50 (99)
T TIGR00823        17 ARSKALEALKAAKAGDFAKARELVEQAGEELNEA   50 (99)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999882063899999999989999999


No 17 
>pfam07148 MalM Maltose operon periplasmic protein precursor (MalM). This family consists of several maltose operon periplasmic protein precursor (MalM) sequences. The function of this family is unknown.
Probab=21.74  E-value=59  Score=13.66  Aligned_cols=24  Identities=21%  Similarity=0.302  Sum_probs=17.4

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             999999608989999999999999
Q gi|254780626|r   34 HANEAITFGKIEEATEACRKAESV   57 (90)
Q Consensus        34 k~~~ai~~~d~~~a~~~~~~~~s~   57 (90)
                      .++.||+.||.+.|..++.++...
T Consensus       239 aI~~AVk~~DI~KAL~LldEAe~L  262 (279)
T pfam07148       239 AIEQAVAKGDIPKALSLLDEAKAL  262 (279)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             999999759999999999999985


No 18 
>pfam10925 DUF2680 Protein of unknown function (DUF2680). Members in this family of proteins are annotated as yckD however currently no function is known.
Probab=20.76  E-value=62  Score=13.54  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=29.2

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999986588616699999999999999984
Q gi|254780626|r   55 ESVIQKAKSKGIFHGNAASRKVSRLSKRLKGIL   87 (90)
Q Consensus        55 ~s~lDka~kkgiihkn~AsRkKSrL~~~v~~~~   87 (90)
                      -.+||+.+.=|+|.+-.|.-.++.+-.+++.+.
T Consensus        21 Kqii~KyVe~G~iT~eQa~~i~~~id~r~~~~~   53 (59)
T pfam10925        21 KQVIDKYVEAGVITKEQADHIKKNIDKRVEYMK   53 (59)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999999998275649999999999999999999


Done!