HHsearch alignment for GI: 254780626 and conserved domain: pfam01649

>pfam01649 Ribosomal_S20p Ribosomal protein S20. Bacterial ribosomal protein S20 interacts with 16S rRNA.

Probab=99.94  E-value=1.2e-26  Score=179.79  Aligned_cols=84  Identities=44%  Similarity=0.576  Sum_probs=82.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             68989999999999999999999999999999999999608989999999999999999986588616699999999999
Q gi|254780626|r    2 ANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLSK   81 (90)
Q Consensus         2 an~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~~   81 (90)
T Consensus         1 AN~kSA~KR~rq~~krr~~N~~~kS~~rT~iKkv~~ai~~gd~~~A~~~l~~a~~~iDkaa~KGiiHkN~AARkkSRL~~   80 (84)
T pfam01649         1 ANIKSAKKRIRQNEKRRLRNKSYKSKMRTLIKKVREAIEAGEKDKAKEALKEVQSKIDKAAKKGVIHKNTAARKKSRLAA   80 (84)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             97188999999999999999999999999999999999858999999999999999999974586643068889999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780626|r   82 RLKG   85 (90)
Q Consensus        82 ~v~~   85 (90)
T Consensus        81 ~vnK   84 (84)
T pfam01649        81 ILNK   84 (84)
T ss_pred             HHCC
T ss_conf             8629