Query gi|254780626|ref|YP_003065039.1| 30S ribosomal protein S20 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 90 No_of_seqs 107 out of 1206 Neff 5.5 Searched_HMMs 33803 Date Wed Jun 1 15:06:52 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780626.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2vqe_T 30S ribosomal protein 100.0 1.8E-28 5.3E-33 190.5 11.5 90 1-90 6-95 (106) 2 >3i1m_T 30S ribosomal protein 99.9 5.8E-28 1.7E-32 187.4 9.1 87 1-87 1-87 (87) 3 >3bbn_T Ribosomal protein S20; 99.9 3.9E-28 1.2E-32 188.4 4.8 90 1-90 84-182 (202) 4 >1yz1_A Translationally contro 40.1 24 0.00072 15.6 5.3 41 22-62 88-128 (174) 5 >3dza_A Uncharacterized putati 36.6 28 0.00082 15.3 3.0 34 31-64 38-71 (191) 6 >1h6q_A TCTP, P23FYP, translat 31.3 34 0.001 14.7 5.9 41 22-62 82-122 (168) 7 >1txj_A Translationally contro 31.3 34 0.001 14.7 5.3 40 22-61 85-124 (171) 8 >2kho_A Heat shock protein 70; 30.8 35 0.001 14.7 3.7 42 22-63 36-77 (82) 9 >3de8_A Soluble cytochrome B56 29.1 37 0.0011 14.5 5.5 39 24-62 64-102 (106) 10 >1dkx_A Substrate binding doma 27.8 39 0.0012 14.4 5.2 42 22-63 36-77 (84) 11 >1tq4_A IIGP1, interferon-indu 26.4 41 0.0012 14.2 2.3 42 31-72 38-79 (99) 12 >1z19_A Integrase; protein-DNA 21.4 52 0.0015 13.6 3.6 41 33-73 52-93 (93) 13 >1zar_A RIO2 kinase; serine ki 21.0 39 0.0012 14.4 1.1 26 44-69 5-30 (95) No 1 >>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (T:) Probab=99.96 E-value=1.8e-28 Score=190.48 Aligned_cols=90 Identities=37% Similarity=0.470 Sum_probs=88.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 96898999999999999999999999999999999999960898999999999999999998658861669999999999 Q gi|254780626|r 1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLS 80 (90) Q Consensus 1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~ 80 (90) ||||+|++||+||++++|++|++++|++||++|+|+.+|++||.+++.++|+.+++.||+++++||||+|+|+|+||||+ T Consensus 6 MaN~kSA~KRir~~~krr~rNr~~kS~ikT~iKk~~~Ai~~~d~~~a~~~l~~a~s~iDkaa~KGiiHkN~AaRkKSRL~ 85 (106) T 2vqe_T 6 PKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLM 85 (106) T ss_dssp --CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTTTSSCTTHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 78986189999999999999999999999999999999872789999999999999999998679876013889999999 Q ss_pred HHHHHHHHCC Q ss_conf 9999984269 Q gi|254780626|r 81 KRLKGILTSA 90 (90) Q Consensus 81 ~~v~~~~~~A 90 (90) ..|+++..+| T Consensus 86 ~~in~~~~~a 95 (106) T 2vqe_T 86 RKVRQLLEAA 95 (106) T ss_dssp HHHHHHHTTT T ss_pred HHHHHHHHHH T ss_conf 9999998631 No 2 >>3i1m_T 30S ribosomal protein S20; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_T* 3e1a_N 3e1c_N 1vs5_T 3i1o_T 3i1q_T 3i1s_T 3i1z_T 3i21_T 2qal_T* 1p6g_T 1p87_T 2aw7_T 2avy_T 2i2u_T 2i2p_T* 2qan_T* 2qb9_T* 2qbb_T* 2qbd_T ... (T:) Probab=99.95 E-value=5.8e-28 Score=187.41 Aligned_cols=87 Identities=30% Similarity=0.445 Sum_probs=85.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 96898999999999999999999999999999999999960898999999999999999998658861669999999999 Q gi|254780626|r 1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLS 80 (90) Q Consensus 1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~ 80 (90) ||||+|++||+||+++++++|++++|.+||++|+|+.+|++||.+++.++|+.++|.||+++++||||+|+|+|++|||+ T Consensus 1 MaN~kSa~KR~r~~~krr~~N~~~kS~~kT~iKk~~~ai~~~d~~~a~~~l~~a~s~iDkaa~KgviHkN~AaRkKSRL~ 80 (87) T 3i1m_T 1 MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLT 80 (87) T ss_dssp --CCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 99818899999999999999999999999999999999983888999999999999999999769766668889999999 Q ss_pred HHHHHHH Q ss_conf 9999984 Q gi|254780626|r 81 KRLKGIL 87 (90) Q Consensus 81 ~~v~~~~ 87 (90) +.++++. T Consensus 81 ~~~n~~a 87 (87) T 3i1m_T 81 AQINKLA 87 (87) T ss_dssp HHHTTCC T ss_pred HHHHHCC T ss_conf 9987609 No 3 >>3bbn_T Ribosomal protein S20; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (T:) Probab=99.94 E-value=3.9e-28 Score=188.41 Aligned_cols=90 Identities=31% Similarity=0.351 Sum_probs=86.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 968989999999999999999999999999999999999608---------98999999999999999998658861669 Q gi|254780626|r 1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFG---------KIEEATEACRKAESVIQKAKSKGIFHGNA 71 (90) Q Consensus 1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~---------d~~~a~~~~~~~~s~lDka~kkgiihkn~ 71 (90) ||||+|++||+||++++|++|++++|++||++|+|+++|++| |.++++++|.++|+.||++++|||||+|+ T Consensus 84 MaN~KSA~KRiRqseKRRlrNka~KS~iKT~iKKv~~AIeag~k~~~~~~~d~e~A~~ll~~a~s~IDKAakKGvIHKNt 163 (202) T 3bbn_T 84 TKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNT 163 (202) T ss_dssp SCCCCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCCSSSCCCHHHHHHHHHHHHHTTSSSSSSSCTTH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH T ss_conf 76876389999999999999999999999999999999972564434331029999999999999999998569766105 Q ss_pred HHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999984269 Q gi|254780626|r 72 ASRKVSRLSKRLKGILTSA 90 (90) Q Consensus 72 AsRkKSrL~~~v~~~~~~A 90 (90) |+|+||||++++|++..++ T Consensus 164 AARkKSRLak~vk~l~~~a 182 (202) T 3bbn_T 164 GARRKSRLARRKKAVEIHH 182 (202) T ss_dssp HHHHHHHHTTHHHHSSCC- T ss_pred HHHHHHHHHHHHHHHHHHC T ss_conf 8899999999999999974 No 4 >>1yz1_A Translationally controlled tumor protein; unknown function; 2.00A {Homo sapiens} (A:) Probab=40.14 E-value=24 Score=15.59 Aligned_cols=41 Identities=10% Similarity=0.163 Sum_probs=33.0 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999960898999999999999999998 Q gi|254780626|r 22 KSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAK 62 (90) Q Consensus 22 ~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~ 62 (90) ..+++-+|.++|++..-++..+.+....+-..++..+.+.. T Consensus 88 k~y~~yiK~YmK~i~~~L~e~~~e~v~~Fk~~a~~~vK~il 128 (174) T 1yz1_A 88 EAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHIL 128 (174) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999998661098899999988699999987 No 5 >>3dza_A Uncharacterized putative membrane protein; YP_001337144.1, putative membrane protein of unknown function, structural genomics; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} (A:) Probab=36.64 E-value=28 Score=15.26 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=25.7 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999996089899999999999999999865 Q gi|254780626|r 31 FMRHANEAITFGKIEEATEACRKAESVIQKAKSK 64 (90) Q Consensus 31 ~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kk 64 (90) -+...+.+|..|+.++|..++..+...||.+... T Consensus 38 ~i~~Ar~ai~~G~~~~A~~~l~~A~~~l~~~~~d 71 (191) T 3dza_A 38 DIQFARLALFHGQPDSAKKLTDDAAALLAADDAS 71 (191) T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTSCHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999998699789999999999989987500 No 6 >>1h6q_A TCTP, P23FYP, translationally controlled tumor protein; tumor-associated protein, function unknown; NMR {Schizosaccharomyces pombe} (A:) Probab=31.27 E-value=34 Score=14.72 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=33.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999960898999999999999999998 Q gi|254780626|r 22 KSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAK 62 (90) Q Consensus 22 ~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~ 62 (90) .++++-+|.++|++..-++.++.+....+...++..+.+.. T Consensus 82 k~y~~yiK~YmK~i~~~L~e~~perv~~Fk~~a~~~vK~il 122 (168) T 1h6q_A 82 KSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKIL 122 (168) T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHH T ss_conf 99999999999999999866295327814527188999998 No 7 >>1txj_A Translationally controlled tumour-associated protein (TCTP) from plasmodium knowlesi,...; structural genomics consortium, SGC; 2.00A {Plasmodium knowlesi} (A:) Probab=31.27 E-value=34 Score=14.72 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999996089899999999999999999 Q gi|254780626|r 22 KSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKA 61 (90) Q Consensus 22 ~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka 61 (90) ..+++-+|.++|++..-++..+++....+-..++..+.+. T Consensus 85 k~y~~yiK~YmK~ik~~L~e~~perv~~Fk~~a~~~vK~i 124 (171) T 1txj_A 85 KEYSVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHI 124 (171) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999876509778899998779999999 No 8 >>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} (A:524-605) Probab=30.80 E-value=35 Score=14.68 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=31.0 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999608989999999999999999986 Q gi|254780626|r 22 KSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKS 63 (90) Q Consensus 22 ~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~k 63 (90) ..-++.+...+..+..++..+|.+.....+..+...+...+. T Consensus 36 ~~ek~~i~~~i~~~~~~l~~~d~~~i~~k~~~L~~~~~~i~~ 77 (82) T 2kho_A 36 ADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLME 77 (82) T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999988638999999999999999999999 No 9 >>3de8_A Soluble cytochrome B562; Cu-stabilized dimeric superstructure, electron transport, heme, iron, metal-binding, periplasm, transport; HET: HEM; 1.72A {Escherichia coli} PDB: 2qla_A* 3de9_A* 3c62_A* 3c63_A* 2bc5_A* 1qq3_A* 1apc_A 1qpu_A* 256b_A* 3foo_A* 3fop_A* 1lm3_B* 1m6t_A 1yyj_A 1yyx_A 1yza_A 1yzc_A (A:) Probab=29.08 E-value=37 Score=14.50 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999960898999999999999999998 Q gi|254780626|r 24 RRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAK 62 (90) Q Consensus 24 ~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~ 62 (90) --..+-..|..+..++..|+.++|...+..+....+..- T Consensus 64 g~~~L~~~ld~~~~la~~G~l~eAk~~l~~l~~lr~~yH 102 (106) T 3de8_A 64 GFDILVGQIHDALHLANEGKVKEAQAAAEQLKTTCNACH 102 (106) T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999887998999999999999999986 No 10 >>1dkx_A Substrate binding domain of DNAK; DNAK, heat shock protein 70 kDa (HSP70), complex (molecular chaperone/peptide); 2.00A {Escherichia coli} (A:136-219) Probab=27.78 E-value=39 Score=14.36 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999608989999999999999999986 Q gi|254780626|r 22 KSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKS 63 (90) Q Consensus 22 ~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~k 63 (90) -.-++.+...+..+..++...|.++....+..+...+...+. T Consensus 36 ~~~k~~i~~~i~el~~~l~~~d~~~i~~~~~~L~~~~~~i~~ 77 (84) T 1dkx_A 36 ADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLME 77 (84) T ss_dssp HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 668999999999999988659999999999999999999999 No 11 >>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} (A:1-68,A:266-296) Probab=26.41 E-value=41 Score=14.21 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=33.3 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 999999999608989999999999999999986588616699 Q gi|254780626|r 31 FMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAA 72 (90) Q Consensus 31 ~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~A 72 (90) .|.-++..++.||..+|....+.+...||.+..-..|.+..- T Consensus 38 tIt~IEl~L~~GniQ~AnS~Is~ALr~Id~ait~s~ie~k~q 79 (99) T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSITDSVIEKKRQ 79 (99) T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCSHHHHHHHHH T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 999999998747879899999999997215767999998799 No 12 >>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A* (A:1-93) Probab=21.41 E-value=52 Score=13.62 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=30.8 Q ss_pred HHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 999999-96089899999999999999999865886166999 Q gi|254780626|r 33 RHANEA-ITFGKIEEATEACRKAESVIQKAKSKGIFHGNAAS 73 (90) Q Consensus 33 Kk~~~a-i~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~As 73 (90) ..+... .+.+....+...+..+-+.++-|+..|+|..|-++ T Consensus 52 ~~~~~~~~~~~s~~t~~~~~~~l~~~f~~a~~~~~i~~NP~a 93 (93) T 1z19_A 52 AAXLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVA 93 (93) T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTSCSCCTTT T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC T ss_conf 999999987205899999999888874244124454221011 No 13 >>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} (A:188-282) Probab=21.03 E-value=39 Score=14.35 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 89999999999999999986588616 Q gi|254780626|r 44 IEEATEACRKAESVIQKAKSKGIFHG 69 (90) Q Consensus 44 ~~~a~~~~~~~~s~lDka~kkgiihk 69 (90) .+++...+.++...|...-..||+|+ T Consensus 5 ~~~~~~~~~qi~~~l~~lH~~giiHr 30 (95) T 1zar_A 5 VENPDEVLDMILEEVAKFYHRGIVHG 30 (95) T ss_dssp CSCHHHHHHHHHHHHHHHHHTTEECS T ss_pred HHHHHHHHHHHHHHHHHHHHCCEEEC T ss_conf 77899999999999999845888846 Done!