RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780626|ref|YP_003065039.1| 30S ribosomal protein S20 [Candidatus Liberibacter asiaticus str. psy62] (90 letters) >2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (T:) Length = 106 Score = 77.0 bits (190), Expect = 8e-16 Identities = 33/90 (36%), Positives = 54/90 (60%) Query: 1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60 SA K R+ +R L NK+++S++++ + A + GK EEA + RKAES+I K Sbjct: 6 PKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDK 65 Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGILTSA 90 A H NAA+R+ SRL ++++ +L +A Sbjct: 66 AAKGSTLHKNAAARRKSRLMRKVRQLLEAA 95 >3i1m_T 30S ribosomal protein S20; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_T* 3e1a_N 3e1c_N 1vs5_T 3i1o_T 3i1q_T 3i1s_T 3i1z_T 3i21_T 2qal_T* 1p6g_T 1p87_T 2aw7_T 2avy_T 2i2u_T 2i2p_T* 2qan_T* 2qb9_T* 2qbb_T* 2qbd_T ... (T:) Length = 87 Score = 72.7 bits (179), Expect = 2e-14 Identities = 26/86 (30%), Positives = 46/86 (53%) Query: 1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60 MAN SAKK + + N SRRS +R+F++ AI G A +A + + ++ + Sbjct: 1 MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDR 60 Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGI 86 +KG+ H N A+R + L+ ++ + Sbjct: 61 QAAKGLIHKNKAARHKANLTAQINKL 86 >3bbn_T Ribosomal protein S20; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (T:) Length = 202 Score = 65.8 bits (160), Expect = 2e-12 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 9/99 (9%) Query: 1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGK---------IEEATEAC 51 DSA K R+ +R + NKS++S R+ M+ EA+ K I + Sbjct: 84 TKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKTDAQADEIVTVEKLI 143 Query: 52 RKAESVIQKAKSKGIFHGNAASRKVSRLSKRLKGILTSA 90 +A S I KA H N +R+ SRL++R K + Sbjct: 144 GEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHH 182 >1uc2_A PH1602, hypothetical protein PH1602; structural genomics, unknown function; HET: SUC; 2.15A {Pyrococcus horikoshii} (A:) Length = 481 Score = 25.8 bits (56), Expect = 1.9 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 6/74 (8%) Query: 6 SAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKG 65 + + + RK A R R + + + A EEA A + ++V++ G Sbjct: 406 AGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAG 465 Query: 66 IFHGNAASRKVSRL 79 I ++ V+R+ Sbjct: 466 I------AKLVARM 473 >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} (A:147-418) Length = 272 Score = 25.8 bits (55), Expect = 2.0 Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 2/57 (3%) Query: 1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKI--EEATEACRKAE 55 + D+ +++I A K R++ S + + G EE R Sbjct: 212 LLVDDALQELIHSEAGEQAXEKHIRATTPSIRDDGLDKVRQGITSLEEVXRGSRSHH 268 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 23.7 bits (51), Expect = 9.4 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 84 KGILTSA 90 KGILT+A Sbjct: 4 KGILTTA 10 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.316 0.124 0.319 Gapped Lambda K H 0.267 0.0731 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 537,796 Number of extensions: 18722 Number of successful extensions: 129 Number of sequences better than 10.0: 1 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 10 Length of query: 90 Length of database: 4,956,049 Length adjustment: 52 Effective length of query: 38 Effective length of database: 3,198,189 Effective search space: 121531182 Effective search space used: 121531182 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.0 bits)