BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780626|ref|YP_003065039.1| 30S ribosomal protein S20
[Candidatus Liberibacter asiaticus str. psy62]
         (90 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780626|ref|YP_003065039.1| 30S ribosomal protein S20 [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 90

 Score =  175 bits (444), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
          MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK
Sbjct: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGILTSA 90
          AKSKGIFHGNAASRKVSRLSKRLKGILTSA
Sbjct: 61 AKSKGIFHGNAASRKVSRLSKRLKGILTSA 90


>gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 396

 Score = 22.7 bits (47), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 1   MANKDSAKKMIRKIARRTLINKSRRSSVRSFMR 33
           ++NK+SA+ + ++ A+R L+     SS R+  R
Sbjct: 279 LSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTR 311


>gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 361

 Score = 20.8 bits (42), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 19  LINKSRRSSVRSFMRHANEAITFGKIEE 46
           +I    RS+++     A  A+TF  +EE
Sbjct: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEE 147


>gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 222

 Score = 20.8 bits (42), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 51 CRKAESVIQKAKSKGIFHG 69
           +KA + I+KA+  G F+G
Sbjct: 74 LKKANAFIEKAEVHGNFYG 92


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.124    0.319 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,493
Number of Sequences: 1233
Number of extensions: 1081
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 90
length of database: 328,796
effective HSP length: 58
effective length of query: 32
effective length of database: 257,282
effective search space:  8233024
effective search space used:  8233024
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 31 (16.5 bits)