HHsearch alignment for GI: 254780627 and conserved domain: CHL00095

>CHL00095 clpC Clp protease ATP binding subunit.
Probab=98.66  E-value=2.9e-05  Score=57.43  Aligned_cols=254  Identities=19%  Similarity=0.248  Sum_probs=148.5

Q ss_pred             HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-C----CCCEEEEEHHHHHHHH
Q ss_conf             3288614789999999982410013655555489862788885799999999998630-6----8816864698889999
Q gi|254780627|r  167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-P----NLRVVYLTAEYFMWRF  241 (502)
Q Consensus       167 FVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-~----~~~v~y~~~e~F~~~~  241 (502)
T Consensus       180 pvIGRd~EI~-----r~i~IL~RR---~KNNpi-LvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~----L  246 (823)
T CHL00095        180 PVIGRDKEIE-----RVIQILGRR---TKNNPI-LIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGL----L  246 (823)
T ss_pred             CCCCCHHHHH-----HHHHHHHHH---CCCCCE-EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHH----H
T ss_conf             8759569999-----999999773---248850-23799987999999999976088998687599368842887----7


Q ss_pred             HHHHHCCCHHHHHHHHH---------HCCHHHHHHHHHHCCC-CH--HHHHHHHHHHHHHCCCEEEEECCCCHHHHCC-C
Q ss_conf             99986198899999974---------0310205444453175-06--9999999999885698799964875676136-3
Q gi|254780627|r  242 ASAIRDNCALNLKDSLR---------NIDLLLIDDMQFLQGK-LI--QHEFCHLLNSLLDSAKQVVAAADRPPSELES-L  308 (502)
Q Consensus       242 ~~a~~~~~~~~fr~~~r---------~~DvLliDDiqfl~gk-~t--qee~f~~~n~l~~~gkqiv~tsd~~P~~l~~-l  308 (502)
T Consensus       247 ~AGtkyR--GeFEeRlk~il~ei~~~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarGel~~IGA-TT~~EYrk~i  323 (823)
T CHL00095        247 LAGTKYR--GEFEERIKKIMDEIKKANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARGKLQCIGA-TTLEEYRKHI  323 (823)
T ss_pred             HHCCCCC--HHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE-CCHHHHHHHH
T ss_conf             5334222--679999999999998579869997351653288976664317887657864898669970-7889999985


Q ss_pred             --CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC---CCC-------HHHHHHHHH
Q ss_conf             --03457653021157751588899999999999886431168978989999998502---788-------899999999
Q gi|254780627|r  309 --DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV---TTS-------GRELDGAFN  376 (502)
Q Consensus       309 --~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~---~~~-------vR~Legal~  376 (502)
T Consensus       324 EkD~AL~RRFq---~V~V~EPs~e~t~~IL~gl-~~~yE~~H~V~i~d~Ai~aav~LS~RYi~dr~LPDKAIDllDeA~A  399 (823)
T CHL00095        324 EKDPALERRFQ---PVYVGEPSVEETIEILLGL-RDRYEKHHNLSISDKALEAAAKLSDQYIKDRFLPDKAIDLLDEAGS  399 (823)
T ss_pred             HCCHHHHHHCC---CCCCCCCCHHHHHHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             30588996268---4102899879999999999-9999875088504789999999877640377782178888999989


Q ss_pred             H---------------------HHHHHH-HCCCCCHHHHHHHHH--------------HH----HCCCCCCCCCHHHHHH
Q ss_conf             9---------------------999863-024687788999998--------------76----3037887579899999
Q gi|254780627|r  377 Q---------------------LVFRHS-FAPILTAEIADELLS--------------HL----VNTGETKKMRIEDIQR  416 (502)
Q Consensus       377 ~---------------------l~~~~~-~~~~~~~~~~~~~l~--------------~~----~~~~~~~~i~~~~I~~  416 (502)
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dI~~  479 (823)
T CHL00095        400 RVRLINKQLPPAARELDKELRHILKDKDEAIRSQDFETAKQLRDREMEVRTQIAAMKQSKKTEEELQKEVPVVTEKDIAE  479 (823)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             99987325867899999999999999999996744999999998899999999999999874044323677207999999


Q ss_pred             HHHHHHCCCHHHHHCCCCCHHHCH
Q ss_conf             999980999999408887740144
Q gi|254780627|r  417 MVAKHYNISRNDLLSNRRVRTVVR  440 (502)
Q Consensus       417 ~V~~~~~i~~~~l~s~~R~~~i~~  440 (502)
T Consensus       480 vvs~~tgiPv~~~~~~e~~~l~~l  503 (823)
T CHL00095        480 IVSAWTGIPVNKLTKSESEKLIHM  503 (823)
T ss_pred             HHHHHHCCCHHHHCCCHHHHHHHH
T ss_conf             999986898476334588999878