HHsearch alignment for GI: 254780627 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=98.66 E-value=2.9e-05 Score=57.43 Aligned_cols=254 Identities=19% Similarity=0.248 Sum_probs=148.5
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-C----CCCEEEEEHHHHHHHH
Q ss_conf 3288614789999999982410013655555489862788885799999999998630-6----8816864698889999
Q gi|254780627|r 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-P----NLRVVYLTAEYFMWRF 241 (502)
Q Consensus 167 FVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-~----~~~v~y~~~e~F~~~~ 241 (502)
T Consensus 180 pvIGRd~EI~-----r~i~IL~RR---~KNNpi-LvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~----L 246 (823)
T CHL00095 180 PVIGRDKEIE-----RVIQILGRR---TKNNPI-LIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGL----L 246 (823)
T ss_pred CCCCCHHHHH-----HHHHHHHHH---CCCCCE-EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHH----H
T ss_conf 8759569999-----999999773---248850-23799987999999999976088998687599368842887----7
Q ss_pred HHHHHCCCHHHHHHHHH---------HCCHHHHHHHHHHCCC-CH--HHHHHHHHHHHHHCCCEEEEECCCCHHHHCC-C
Q ss_conf 99986198899999974---------0310205444453175-06--9999999999885698799964875676136-3
Q gi|254780627|r 242 ASAIRDNCALNLKDSLR---------NIDLLLIDDMQFLQGK-LI--QHEFCHLLNSLLDSAKQVVAAADRPPSELES-L 308 (502)
Q Consensus 242 ~~a~~~~~~~~fr~~~r---------~~DvLliDDiqfl~gk-~t--qee~f~~~n~l~~~gkqiv~tsd~~P~~l~~-l 308 (502)
T Consensus 247 ~AGtkyR--GeFEeRlk~il~ei~~~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarGel~~IGA-TT~~EYrk~i 323 (823)
T CHL00095 247 LAGTKYR--GEFEERIKKIMDEIKKANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARGKLQCIGA-TTLEEYRKHI 323 (823)
T ss_pred HHCCCCC--HHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE-CCHHHHHHHH
T ss_conf 5334222--679999999999998579869997351653288976664317887657864898669970-7889999985
Q ss_pred --CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC---CCC-------HHHHHHHHH
Q ss_conf --03457653021157751588899999999999886431168978989999998502---788-------899999999
Q gi|254780627|r 309 --DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV---TTS-------GRELDGAFN 376 (502)
Q Consensus 309 --~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~---~~~-------vR~Legal~ 376 (502)
T Consensus 324 EkD~AL~RRFq---~V~V~EPs~e~t~~IL~gl-~~~yE~~H~V~i~d~Ai~aav~LS~RYi~dr~LPDKAIDllDeA~A 399 (823)
T CHL00095 324 EKDPALERRFQ---PVYVGEPSVEETIEILLGL-RDRYEKHHNLSISDKALEAAAKLSDQYIKDRFLPDKAIDLLDEAGS 399 (823)
T ss_pred HCCHHHHHHCC---CCCCCCCCHHHHHHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 30588996268---4102899879999999999-9999875088504789999999877640377782178888999989
Q ss_pred H---------------------HHHHHH-HCCCCCHHHHHHHHH--------------HH----HCCCCCCCCCHHHHHH
Q ss_conf 9---------------------999863-024687788999998--------------76----3037887579899999
Q gi|254780627|r 377 Q---------------------LVFRHS-FAPILTAEIADELLS--------------HL----VNTGETKKMRIEDIQR 416 (502)
Q Consensus 377 ~---------------------l~~~~~-~~~~~~~~~~~~~l~--------------~~----~~~~~~~~i~~~~I~~ 416 (502)
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dI~~ 479 (823)
T CHL00095 400 RVRLINKQLPPAARELDKELRHILKDKDEAIRSQDFETAKQLRDREMEVRTQIAAMKQSKKTEEELQKEVPVVTEKDIAE 479 (823)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99987325867899999999999999999996744999999998899999999999999874044323677207999999
Q ss_pred HHHHHHCCCHHHHHCCCCCHHHCH
Q ss_conf 999980999999408887740144
Q gi|254780627|r 417 MVAKHYNISRNDLLSNRRVRTVVR 440 (502)
Q Consensus 417 ~V~~~~~i~~~~l~s~~R~~~i~~ 440 (502)
T Consensus 480 vvs~~tgiPv~~~~~~e~~~l~~l 503 (823)
T CHL00095 480 IVSAWTGIPVNKLTKSESEKLIHM 503 (823)
T ss_pred HHHHHHCCCHHHHCCCHHHHHHHH
T ss_conf 999986898476334588999878