HHsearch alignment for GI: 254780627 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=98.06 E-value=0.00029 Score=50.36 Aligned_cols=222 Identities=17% Similarity=0.228 Sum_probs=128.6
Q ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHH------CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 644788763288614789999999982------41001365555548986278888579999999999863068816864
Q gi|254780627|r 159 DSRFVFSTFIEGSSNRVALTAAQSIAE------VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 (502)
Q Consensus 159 NpryTFDnFVVG~sN~lA~aAAkaVAe------~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~ 232 (502)
T Consensus 502 ~le~~L~~~ViGQd~AI~-~vs~ai~rsraGl~~~~rPi-----gsFlf~GPTGvGKTElAK~LA~~LFg~--e~~liR~ 573 (823)
T CHL00095 502 HMEETLHKRIIGQDEAVV-AVSKAIRRARVGLKNPNRPI-----ASFIFCGPTGVGKTELTKALASYFFGS--EEAMIRL 573 (823)
T ss_pred HHHHHHHHHHCCCHHHHH-HHHHHHHHHHCCCCCCCCCC-----EEEEEECCCCCCHHHHHHHHHHHHCCC--CCCEEEE
T ss_conf 788878778407699999-99999999970899899974-----689987899887799999999997478--2025885
Q ss_pred EHHHHHHHH-HHHHH----------C-CCH-HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHC-C-----
Q ss_conf 698889999-99986----------1-988-999999740310205444453175069999999999--8856-9-----
Q gi|254780627|r 233 TAEYFMWRF-ASAIR----------D-NCA-LNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDS-A----- 291 (502)
Q Consensus 233 ~~e~F~~~~-~~a~~----------~-~~~-~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~-g----- 291 (502)
T Consensus 574 DMSEy~E~hsvsrLIGaPPGYVGy~eGG~LTeaVr--r~PysVvLfDEIEK-AHpdV~nilLQvlDdG~LtD~~Gr~vdF 650 (823)
T CHL00095 574 DMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVR--KKPYTVVLFDEIEK-AHPDIFNLLLQILDDGRLTDSKGRTIDF 650 (823)
T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHH--CCCCEEEEECHHHH-CCHHHHHHHHHHCCCCCCCCCCCCEEEC
T ss_conf 35101554207674589987667787882019887--19986998621311-3889999887651688434899998843
Q ss_pred --CEEEEECCCCHHHH-----------------------------------CCCCHHHHHHHHCCEEEEECCCCHHHHHH
Q ss_conf --87999648756761-----------------------------------36303457653021157751588899999
Q gi|254780627|r 292 --KQVVAAADRPPSEL-----------------------------------ESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 (502)
Q Consensus 292 --kqiv~tsd~~P~~l-----------------------------------~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~ 334 (502)
T Consensus 651 ~NtIIImTSNlGs~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRiDe--ii~F~~L~~~~l~~ 728 (823)
T CHL00095 651 KNTLIIMTSNLGSKVIEKGGGSLGFKLLEDGTKLDEKQYKRLSNLVNEELKQYFRPEFLNRLDE--IIVFRPLTKDEVWE 728 (823)
T ss_pred EEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCE--EEEECCCCHHHHHH
T ss_conf 1039997165055888741344343334454322023589999999999984379878732782--78618999999999
Q ss_pred HHHHHHHHHH--HHC--CCCCCCHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 9999998864--311--6897898999999850278---889999999999998630246877889999987630
Q gi|254780627|r 335 ILKNRLAISQ--KED--PKLNINEEVLMHVARTVTT---SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN 402 (502)
Q Consensus 335 Il~~k~~~~~--~~~--~~~~l~~~v~~~la~~~~~---~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~ 402 (502)
T Consensus 729 Iv~~~l~~l~~rl~~~~i~l~~~~~a~~~l~~~gy~~~~GARpl~R~I~~~i---------~~~ls~~il~g~~~ 794 (823)
T CHL00095 729 IAEIMLKELFKRLNNQGIQLEVDERFKTLLAKEGYNPLYGARPLRRAIMRLL---------EDPLAEEVLSFKIK 794 (823)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHH---------HHHHHHHHHCCCCC
T ss_conf 9999999999999968985998889999999958797768136889999998---------89999999748889