HHsearch alignment for GI: 254780627 and conserved domain: CHL00095

>CHL00095 clpC Clp protease ATP binding subunit.
Probab=98.06  E-value=0.00029  Score=50.36  Aligned_cols=222  Identities=17%  Similarity=0.228  Sum_probs=128.6

Q ss_pred             CCHHHHHHHCCCCCHHHHHHHHHHHHH------CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             644788763288614789999999982------41001365555548986278888579999999999863068816864
Q gi|254780627|r  159 DSRFVFSTFIEGSSNRVALTAAQSIAE------VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL  232 (502)
Q Consensus       159 NpryTFDnFVVG~sN~lA~aAAkaVAe------~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~  232 (502)
T Consensus       502 ~le~~L~~~ViGQd~AI~-~vs~ai~rsraGl~~~~rPi-----gsFlf~GPTGvGKTElAK~LA~~LFg~--e~~liR~  573 (823)
T CHL00095        502 HMEETLHKRIIGQDEAVV-AVSKAIRRARVGLKNPNRPI-----ASFIFCGPTGVGKTELTKALASYFFGS--EEAMIRL  573 (823)
T ss_pred             HHHHHHHHHHCCCHHHHH-HHHHHHHHHHCCCCCCCCCC-----EEEEEECCCCCCHHHHHHHHHHHHCCC--CCCEEEE
T ss_conf             788878778407699999-99999999970899899974-----689987899887799999999997478--2025885


Q ss_pred             EHHHHHHHH-HHHHH----------C-CCH-HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHC-C-----
Q ss_conf             698889999-99986----------1-988-999999740310205444453175069999999999--8856-9-----
Q gi|254780627|r  233 TAEYFMWRF-ASAIR----------D-NCA-LNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDS-A-----  291 (502)
Q Consensus       233 ~~e~F~~~~-~~a~~----------~-~~~-~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~-g-----  291 (502)
T Consensus       574 DMSEy~E~hsvsrLIGaPPGYVGy~eGG~LTeaVr--r~PysVvLfDEIEK-AHpdV~nilLQvlDdG~LtD~~Gr~vdF  650 (823)
T CHL00095        574 DMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVR--KKPYTVVLFDEIEK-AHPDIFNLLLQILDDGRLTDSKGRTIDF  650 (823)
T ss_pred             CCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHH--CCCCEEEEECHHHH-CCHHHHHHHHHHCCCCCCCCCCCCEEEC
T ss_conf             35101554207674589987667787882019887--19986998621311-3889999887651688434899998843


Q ss_pred             --CEEEEECCCCHHHH-----------------------------------CCCCHHHHHHHHCCEEEEECCCCHHHHHH
Q ss_conf             --87999648756761-----------------------------------36303457653021157751588899999
Q gi|254780627|r  292 --KQVVAAADRPPSEL-----------------------------------ESLDPRIRSRLQGGVSVPLGLHDYEMRFS  334 (502)
Q Consensus       292 --kqiv~tsd~~P~~l-----------------------------------~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~  334 (502)
T Consensus       651 ~NtIIImTSNlGs~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRiDe--ii~F~~L~~~~l~~  728 (823)
T CHL00095        651 KNTLIIMTSNLGSKVIEKGGGSLGFKLLEDGTKLDEKQYKRLSNLVNEELKQYFRPEFLNRLDE--IIVFRPLTKDEVWE  728 (823)
T ss_pred             EEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCE--EEEECCCCHHHHHH
T ss_conf             1039997165055888741344343334454322023589999999999984379878732782--78618999999999


Q ss_pred             HHHHHHHHHH--HHC--CCCCCCHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf             9999998864--311--6897898999999850278---889999999999998630246877889999987630
Q gi|254780627|r  335 ILKNRLAISQ--KED--PKLNINEEVLMHVARTVTT---SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN  402 (502)
Q Consensus       335 Il~~k~~~~~--~~~--~~~~l~~~v~~~la~~~~~---~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~  402 (502)
T Consensus       729 Iv~~~l~~l~~rl~~~~i~l~~~~~a~~~l~~~gy~~~~GARpl~R~I~~~i---------~~~ls~~il~g~~~  794 (823)
T CHL00095        729 IAEIMLKELFKRLNNQGIQLEVDERFKTLLAKEGYNPLYGARPLRRAIMRLL---------EDPLAEEVLSFKIK  794 (823)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHH---------HHHHHHHHHCCCCC
T ss_conf             9999999999999968985998889999999958797768136889999998---------89999999748889