HHsearch alignment for GI: 254780627 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=96.89 E-value=0.05 Score=34.45 Aligned_cols=171 Identities=19% Similarity=0.195 Sum_probs=95.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCC-------------------CCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 54898627888857999999999986306-------------------88168646988899999998619889999997
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQP-------------------NLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~-------------------~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~ 257 (502)
T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~---~i~~~~vr~~~~~~ 101 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI---DIIVEQVRELAEFL 101 (325)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCC---CCHHHHHHHHHHHC
T ss_conf 610037999997899999999996586643345520022444320256886599773213333---00699999999860
Q ss_pred ------HHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHH
Q ss_conf ------40310205444453175069999999999885698799964875676136303457653021157751588899
Q gi|254780627|r 258 ------RNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 (502)
Q Consensus 258 ------r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~ 331 (502)
T Consensus 102 ~~~~~~~~~kviiidead~mt~-~A~nallk~lE-ep~~~~~~il~~n-~~~~i---l~tI~SRc---~~i~f~~~~~~~ 172 (325)
T COG0470 102 SESPLEGGYKVVIIDEADKLTE-DAANALLKTLE-EPPKNTRFILITN-DPSKI---LPTIRSRC---QRIRFKPPSRLE 172 (325)
T ss_pred CCCCCCCCCEEEEEECCCCCCH-HHHHHHHHHCC-CCCCCEEEEEEEC-CHHHC---HHHHHHHE---EEEECCCCCHHH
T ss_conf 4465667726999732032698-88876754332-4888716999749-85556---47877560---788767741889
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999999886431168978989999998502788899999999999986302468778899999876
Q gi|254780627|r 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHL 400 (502)
Q Consensus 332 r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~ 400 (502)
T Consensus 173 ~i~~~e----------------~~~l~~i~~~~~gd~r~---~i~~lq~~~~~--~~~~~~~~~~~~~~ 220 (325)
T COG0470 173 AIAWLE----------------DQGLEEIAAVAEGDARK---AINPLQALAAL--EIGEESIYEALLLA 220 (325)
T ss_pred HHHHHH----------------HHHHHHHHHHHCCHHHH---HCCHHHHHHHC--CCCHHHHHHHHHHH
T ss_conf 999850----------------75799999870406887---34899999861--44467899998765