HHsearch alignment for GI: 254780627 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=97.87 E-value=0.0013 Score=45.58 Aligned_cols=257 Identities=19% Similarity=0.256 Sum_probs=145.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH-CC----CCCEEEEEHHHHHHHHH
Q ss_conf 28861478999999998241001365555548986278888579999999999863-06----88168646988899999
Q gi|254780627|r 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR-QP----NLRVVYLTAEYFMWRFA 242 (502)
Q Consensus 168 VVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~-~~----~~~v~y~~~e~F~~~~~ 242 (502)
T Consensus 172 vIGRd~EI~r-----~iqIL~R---R~KNNPvL-iGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~----g~Lv 238 (786)
T COG0542 172 VIGRDEEIRR-----TIQILSR---RTKNNPVL-VGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL----GSLV 238 (786)
T ss_pred CCCHHHHHHH-----HHHHHHC---CCCCCCEE-ECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECH----HHHH
T ss_conf 7374799999-----9999835---68899847-66898889999989999974699997875887997148----7674
Q ss_pred HHHH-CCCHHH-HHHHHHH-----CCHHHHHHHHHHCCC-CH---HHHHHHHHHHHHHCCCEEEEECCCCHHHHC---CC
Q ss_conf 9986-198899-9999740-----310205444453175-06---999999999988569879996487567613---63
Q gi|254780627|r 243 SAIR-DNCALN-LKDSLRN-----IDLLLIDDMQFLQGK-LI---QHEFCHLLNSLLDSAKQVVAAADRPPSELE---SL 308 (502)
Q Consensus 243 ~a~~-~~~~~~-fr~~~r~-----~DvLliDDiqfl~gk-~t---qee~f~~~n~l~~~gkqiv~tsd~~P~~l~---~l 308 (502)
T Consensus 239 AGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLARGeL~~IGATT~-~EYRk~iEK 317 (786)
T COG0542 239 AGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTL-DEYRKYIEK 317 (786)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHH
T ss_conf 6465357389999999999851798499982355405777666665125664677874587379973558-999887330
Q ss_pred CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH--HHH----HHHHHHHHHHH
Q ss_conf 034576530211577515888999999999998864311689789899999985027888--999----99999999986
Q gi|254780627|r 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG--REL----DGAFNQLVFRH 382 (502)
Q Consensus 309 ~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~v--R~L----egal~~l~~~~ 382 (502)
T Consensus 318 D~AL~RRFQ~---V~V~EPs~e~ti~ILrG-lk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~A~~ 393 (786)
T COG0542 318 DAALERRFQK---VLVDEPSVEDTIAILRG-LKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARV 393 (786)
T ss_pred CHHHHHCCCE---EECCCCCHHHHHHHHHH-HHHHHHHCCCCEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 6677846751---02799898999999987-7888877069643379999999999864556789946777889999999
Q ss_pred HHC--CCCCHH----------------------HHHHHHHHHHCC-----------CCCCCCCHHHHHHHHHHHHCCCHH
Q ss_conf 302--468778----------------------899999876303-----------788757989999999998099999
Q gi|254780627|r 383 SFA--PILTAE----------------------IADELLSHLVNT-----------GETKKMRIEDIQRMVAKHYNISRN 427 (502)
Q Consensus 383 ~~~--~~~~~~----------------------~~~~~l~~~~~~-----------~~~~~i~~~~I~~~V~~~~~i~~~ 427 (502)
T Consensus 394 ~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Ia~vv~~~TgIPv~ 472 (786)
T COG0542 394 RLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDIAEVVARWTGIPVA 472 (786)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHCCCHH
T ss_conf 72034884056899999998888988744036888888778998754100567888762-26798999999998789836
Q ss_pred HHHCCCCCHHHCHHHH
Q ss_conf 9408887740144579
Q gi|254780627|r 428 DLLSNRRVRTVVRPRQ 443 (502)
Q Consensus 428 ~l~s~~R~~~i~~~Rq 443 (502)
T Consensus 473 ~l~~~e~~kll~le~~ 488 (786)
T COG0542 473 KLLEDEKEKLLNLERR 488 (786)
T ss_pred HHCHHHHHHHHHHHHH
T ss_conf 4133258899867999