HHsearch alignment for GI: 254780627 and conserved domain: COG1100
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only].
Probab=90.72 E-value=0.25 Score=29.52 Aligned_cols=104 Identities=13% Similarity=0.188 Sum_probs=50.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH-C-CCCCEEEEEHHHHHH--HH-HHHHHCCCHHHH---HHHH-HHCCH-HHHHHH
Q ss_conf 8986278888579999999999863-0-688168646988899--99-999861988999---9997-40310-205444
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKR-Q-PNLRVVYLTAEYFMW--RF-ASAIRDNCALNL---KDSL-RNIDL-LLIDDM 268 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~-~-~~~~v~y~~~e~F~~--~~-~~a~~~~~~~~f---r~~~-r~~Dv-LliDDi 268 (502)
T Consensus 8 ivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~ 87 (219)
T COG1100 8 IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDS 87 (219)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 99999999988999999964767655676145404320362266600267676798699999887504389789999976
Q ss_pred HHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf 453175-0699999999998856987999648756
Q gi|254780627|r 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPP 302 (502)
Q Consensus 269 qfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P 302 (502)
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~D 122 (219)
T COG1100 88 TLRESSDELTEEWLEELRELAPDDVPILLVGNKID 122 (219)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 20565788999999999874668867999697610