HHsearch alignment for GI: 254780627 and conserved domain: COG1221

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=98.17  E-value=0.00026  Score=50.69  Aligned_cols=211  Identities=17%  Similarity=0.142  Sum_probs=124.9

Q ss_pred             CCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH
Q ss_conf             76447887632886147899999999824100136555554898627888857999999999986306881686469888
Q gi|254780627|r  158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF  237 (502)
Q Consensus       158 LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F  237 (502)
T Consensus        71 ~~~~~~~~~LI-G~~~~~~~~~eqik~~ap~-------~~~vLi~GetGtGKel~A~~iH-~~s~r~~~~PFI~~NCa~~  141 (403)
T COG1221          71 YLKSEALDDLI-GESPSLQELREQIKAYAPS-------GLPVLIIGETGTGKELFARLIH-ALSARRAEAPFIAFNCAAY  141 (403)
T ss_pred             HCCCHHHHHHH-CCCHHHHHHHHHHHHHCCC-------CCCEEEECCCCCCHHHHHHHHH-HHHHCCCCCCEEEEEHHHH
T ss_conf             10221566663-5688899999999861899-------9847986688753889999999-8612135898799777773


Q ss_pred             HHHHHHHH----HCCCHHH-HHH---HH--HHCCHHHHHHHHHHCCCCHHHHHHHHHHHH----------HHCCCEEEEE
Q ss_conf             99999998----6198899-999---97--403102054444531750699999999998----------8569879996
Q gi|254780627|r  238 MWRFASAI----RDNCALN-LKD---SL--RNIDLLLIDDMQFLQGKLIQHEFCHLLNSL----------LDSAKQVVAA  297 (502)
Q Consensus       238 ~~~~~~a~----~~~~~~~-fr~---~~--r~~DvLliDDiqfl~gk~tqee~f~~~n~l----------~~~gkqiv~t  297 (502)
T Consensus       142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP-~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~A  220 (403)
T COG1221         142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLP-PEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICA  220 (403)
T ss_pred             CCCHHHHHHHCCCCCEEECCCCCCCCHHEECCCCEEEHHHHHHCC-HHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEC
T ss_conf             767777777320000002566786764205279777656365379-8589999999871865766888886777404513


Q ss_pred             CCCCHHH-H-CCCCHHHHHHHHCCEEEEECCCCHHHHHH----HHHHHHHHHHHHCCCCCC---C-HHHHHHHHHHCCCC
Q ss_conf             4875676-1-36303457653021157751588899999----999999886431168978---9-89999998502788
Q gi|254780627|r  298 ADRPPSE-L-ESLDPRIRSRLQGGVSVPLGLHDYEMRFS----ILKNRLAISQKEDPKLNI---N-EEVLMHVARTVTTS  367 (502)
Q Consensus       298 sd~~P~~-l-~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~----Il~~k~~~~~~~~~~~~l---~-~~v~~~la~~~~~~  367 (502)
T Consensus       221 T~~~l~~~~~~g--~dl~~rl~---~~~I~LPpLrER~~Di~~L~e~Fl~~-~~~~l~~~~~~~~~~a~~~L~~y~~pGN  294 (403)
T COG1221         221 TTEDLEEAVLAG--ADLTRRLN---ILTITLPPLRERKEDILLLAEHFLKS-EARRLGLPLSVDSPEALRALLAYDWPGN  294 (403)
T ss_pred             CCCCHHHHHHHH--CCHHHHHC---CCEECCCCHHHCHHHHHHHHHHHHHH-HHHHCCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf             566879998740--52556416---75431897243555599999999999-9997399988888999999984889983


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             89999999999998630
Q gi|254780627|r  368 GRELDGAFNQLVFRHSF  384 (502)
Q Consensus       368 vR~Legal~~l~~~~~~  384 (502)
T Consensus       295 irELkN~Ve~~~~~~~~  311 (403)
T COG1221         295 IRELKNLVERAVAQASG  311 (403)
T ss_pred             HHHHHHHHHHHHHHHCC
T ss_conf             99999999999997354