HHsearch alignment for GI: 254780627 and conserved domain: COG1221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=98.17 E-value=0.00026 Score=50.69 Aligned_cols=211 Identities=17% Similarity=0.142 Sum_probs=124.9
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH
Q ss_conf 76447887632886147899999999824100136555554898627888857999999999986306881686469888
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F 237 (502)
T Consensus 71 ~~~~~~~~~LI-G~~~~~~~~~eqik~~ap~-------~~~vLi~GetGtGKel~A~~iH-~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 71 YLKSEALDDLI-GESPSLQELREQIKAYAPS-------GLPVLIIGETGTGKELFARLIH-ALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred HCCCHHHHHHH-CCCHHHHHHHHHHHHHCCC-------CCCEEEECCCCCCHHHHHHHHH-HHHHCCCCCCEEEEEHHHH
T ss_conf 10221566663-5688899999999861899-------9847986688753889999999-8612135898799777773
Q ss_pred HHHHHHHH----HCCCHHH-HHH---HH--HHCCHHHHHHHHHHCCCCHHHHHHHHHHHH----------HHCCCEEEEE
Q ss_conf 99999998----6198899-999---97--403102054444531750699999999998----------8569879996
Q gi|254780627|r 238 MWRFASAI----RDNCALN-LKD---SL--RNIDLLLIDDMQFLQGKLIQHEFCHLLNSL----------LDSAKQVVAA 297 (502)
Q Consensus 238 ~~~~~~a~----~~~~~~~-fr~---~~--r~~DvLliDDiqfl~gk~tqee~f~~~n~l----------~~~gkqiv~t 297 (502)
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP-~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~A 220 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLP-PEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICA 220 (403)
T ss_pred CCCHHHHHHHCCCCCEEECCCCCCCCHHEECCCCEEEHHHHHHCC-HHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEC
T ss_conf 767777777320000002566786764205279777656365379-8589999999871865766888886777404513
Q ss_pred CCCCHHH-H-CCCCHHHHHHHHCCEEEEECCCCHHHHHH----HHHHHHHHHHHHCCCCCC---C-HHHHHHHHHHCCCC
Q ss_conf 4875676-1-36303457653021157751588899999----999999886431168978---9-89999998502788
Q gi|254780627|r 298 ADRPPSE-L-ESLDPRIRSRLQGGVSVPLGLHDYEMRFS----ILKNRLAISQKEDPKLNI---N-EEVLMHVARTVTTS 367 (502)
Q Consensus 298 sd~~P~~-l-~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~----Il~~k~~~~~~~~~~~~l---~-~~v~~~la~~~~~~ 367 (502)
T Consensus 221 T~~~l~~~~~~g--~dl~~rl~---~~~I~LPpLrER~~Di~~L~e~Fl~~-~~~~l~~~~~~~~~~a~~~L~~y~~pGN 294 (403)
T COG1221 221 TTEDLEEAVLAG--ADLTRRLN---ILTITLPPLRERKEDILLLAEHFLKS-EARRLGLPLSVDSPEALRALLAYDWPGN 294 (403)
T ss_pred CCCCHHHHHHHH--CCHHHHHC---CCEECCCCHHHCHHHHHHHHHHHHHH-HHHHCCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 566879998740--52556416---75431897243555599999999999-9997399988888999999984889983
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 89999999999998630
Q gi|254780627|r 368 GRELDGAFNQLVFRHSF 384 (502)
Q Consensus 368 vR~Legal~~l~~~~~~ 384 (502)
T Consensus 295 irELkN~Ve~~~~~~~~ 311 (403)
T COG1221 295 IRELKNLVERAVAQASG 311 (403)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999997354