HHsearch alignment for GI: 254780627 and conserved domain: COG2255
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair].
Probab=99.24 E-value=3.2e-09 Score=85.52 Aligned_cols=230 Identities=20% Similarity=0.262 Sum_probs=148.2
Q ss_pred CCCHHHHHHHCCCCCH-----HHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 7644788763288614-----78999999998241001365555548986278888579999999999863068816864
Q gi|254780627|r 158 LDSRFVFSTFIEGSSN-----RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 (502)
Q Consensus 158 LNpryTFDnFVVG~sN-----~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~ 232 (502)
T Consensus 20 lRP~-~l~efi-GQ~~vk~~L~ifI~AAk~r~e~l---------DHvLl~GPPGlGKTTLA~IIA~Emgvn-----~k~t 83 (332)
T COG2255 20 LRPK-TLDEFI-GQEKVKEQLQIFIKAAKKRGEAL---------DHVLLFGPPGLGKTTLAHIIANELGVN-----LKIT 83 (332)
T ss_pred CCCC-CHHHHC-CHHHHHHHHHHHHHHHHHCCCCC---------CEEEEECCCCCCHHHHHHHHHHHHCCC-----EEEC
T ss_conf 5865-488851-83999999999999998449876---------747864799876888999999985677-----3763
Q ss_pred EHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCC---------CHH
Q ss_conf 69888999999986198899999974031020544445317506999999999988569879996487---------567
Q gi|254780627|r 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR---------PPS 303 (502)
Q Consensus 233 ~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~---------~P~ 303 (502)
T Consensus 84 sGp~l-------eK~gDlaaiLt~Le~~DVLFIDEIHrl~-~~vEE~LYpaME---Df~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 84 SGPAL-------EKPGDLAAILTNLEEGDVLFIDEIHRLS-PAVEEVLYPAME---DFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred CCCCC-------CCHHHHHHHHHCCCCCCEEEEEHHHHCC-HHHHHHHHHHHH---HEEEEEEECCCCCCCEEECCCCCE
T ss_conf 66201-------5726599998639867767772553147-428989646753---105778972487553476379981
Q ss_pred -------HHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf -------6136303457653021157751588899999999999886431168978989999998502788899999999
Q gi|254780627|r 304 -------ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 (502)
Q Consensus 304 -------~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~ 376 (502)
T Consensus 153 TLIGATTr~G~lt~PLrdRF--Gi~~rlefY~~~eL~~Iv~r~-----a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRF--GIIQRLEFYTVEELEEIVKRS-----AKILGIEIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred EEEEECCCCCCCCCHHHHHC--CCEEEEECCCHHHHHHHHHHH-----HHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 37510134664563368862--860454058889999999988-----88738776857999999863699389999999
Q ss_pred HHHHHHHHC--CCCCHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHH
Q ss_conf 999986302--4687788999998763037887-579899999999980
Q gi|254780627|r 377 QLVFRHSFA--PILTAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHY 422 (502)
Q Consensus 377 ~l~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~i~~~~I~~~V~~~~ 422 (502)
T Consensus 226 RVRDfa~V~~~~~I~~~ia~~aL~~L~-Vd~~GLd~~D~k~L~~li~~f 273 (332)
T COG2255 226 RVRDFAQVKGDGDIDRDIADKALKMLD-VDELGLDEIDRKYLRALIEQF 273 (332)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHH
T ss_conf 999999981688204899999998729-640255689999999999973