HHsearch alignment for GI: 254780627 and conserved domain: COG3598
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair].
Probab=95.17 E-value=0.036 Score=35.44 Aligned_cols=100 Identities=22% Similarity=0.341 Sum_probs=58.3
Q ss_pred EEEECCCCCCHHHHHH------HHHHHHHH---HCCCCCEEEEEHHHHHHHHHHHHHC---C---------C--------
Q ss_conf 8986278888579999------99999986---3068816864698889999999861---9---------8--------
Q gi|254780627|r 199 LFIHASVGLGKTHLLQ------AIANASIK---RQPNLRVVYLTAEYFMWRFASAIRD---N---------C-------- 249 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~------ai~~~~~~---~~~~~~v~y~~~e~F~~~~~~a~~~---~---------~-------- 249 (502)
T Consensus 92 ~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~ep-GkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~G 170 (402)
T COG3598 92 SILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEP-GKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVSG 170 (402)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-CEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHEECCCCCC
T ss_conf 898448862376899999999986477745335588-8079998226868899999999987099857632200002456
Q ss_pred ------------HHHHHHHHH--HCCHHHHHHH-HHHCCCC---HHH-HHHHHHHHHHH-CCCEEEEECC
Q ss_conf ------------899999974--0310205444-4531750---699-99999999885-6987999648
Q gi|254780627|r 250 ------------ALNLKDSLR--NIDLLLIDDM-QFLQGKL---IQH-EFCHLLNSLLD-SAKQVVAAAD 299 (502)
Q Consensus 250 ------------~~~fr~~~r--~~DvLliDDi-qfl~gk~---tqe-e~f~~~n~l~~-~gkqiv~tsd 299 (502)
T Consensus 171 aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~l~caIiy~hH 240 (402)
T COG3598 171 AADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARNLECAIIYIHH 240 (402)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 7872001058999999999987478749973445422774111689999999999999862773999944