HHsearch alignment for GI: 254780627 and conserved domain: PRK00440
>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=99.48 E-value=1.5e-10 Score=94.91 Aligned_cols=205 Identities=16% Similarity=0.141 Sum_probs=134.0
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688168646988899999
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~ 242 (502)
T Consensus 14 ~l~di~-g~~~~~--~~L~~~i~~-~~~p-----h-lLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r--~i 81 (318)
T PRK00440 14 SLDEVV-GQEEIV--ERLKSFVKE-KNMP-----H-LLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDER--GI 81 (318)
T ss_pred CHHHHC-CCHHHH--HHHHHHHHC-CCCC-----E-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCC--CH
T ss_conf 899941-969999--999999987-9986-----6-9888959988999999999997698643476895164566--71
Q ss_pred HHHHCCCHHHHHHHHH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHC
Q ss_conf 9986198899999974----031020544445317506999999999988569879996487567613630345765302
Q gi|254780627|r 243 SAIRDNCALNLKDSLR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 (502)
Q Consensus 243 ~a~~~~~~~~fr~~~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~ 318 (502)
T Consensus 82 d~vr~-~i~~~~~~~~~~~~~~kiiiiDE~d~l~-~~aq~aL~~~mE~~-~~~~~fil~~n~~-~---kii~~i~SRc-- 152 (318)
T PRK00440 82 DVIRN-KIKEFARTAPVGGAPFKIIFLDEADNLT-SDAQQALRRTMEMY-SQTTRFILSCNYS-S---KIIDPIQSRC-- 152 (318)
T ss_pred HHHHH-HHHHHHHHCCCCCCCEEEEEEECCCCCC-HHHHHHHHHHHHCC-CCCCEEEEECCCC-C---CCCCCHHHHH--
T ss_conf 78999-9999997267789973899986855322-55678887643105-6662588634883-3---3761556551--
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 1157751588899999999999886431168978989999998502788899999999999986302468778899999
Q gi|254780627|r 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELL 397 (502)
Q Consensus 319 Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l 397 (502)
T Consensus 153 -~~i~f~~~~~~~i~~~L~~I-----~~~E~i~~~~~~l~~i~~~s~gdlR~---ain~Lq~~~~~~~~it~~~v~~~~ 222 (318)
T PRK00440 153 -AVFRFSPLPKEAVIERLRYI-----AKNEGLEITDDALEAIYYVSEGDMRK---AINALQAAAATGKEVTEEAVYKIT 222 (318)
T ss_pred -EEEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHH---HHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf -01115789999999999999-----99859998999999999864998999---999999999748987899999997