HHsearch alignment for GI: 254780627 and conserved domain: PRK05342
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional.
Probab=96.18 E-value=0.13 Score=31.40 Aligned_cols=209 Identities=18% Similarity=0.288 Sum_probs=114.0
Q ss_pred HHHHHCCCCCHH---HHHH---HHHHHHHCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 887632886147---8999---9999982410013-65555548986278888579999999999863068816864698
Q gi|254780627|r 163 VFSTFIEGSSNR---VALT---AAQSIAEVDSHGY-TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 163 TFDnFVVG~sN~---lA~a---AAkaVAe~pg~~~-~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
T Consensus 69 ~LD~yVIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l--~vP---F~iaDAT 143 (411)
T PRK05342 69 HLDQYVIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARIL--NVP---FAIADAT 143 (411)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH--CCC---EEEEEEC
T ss_conf 86214028488889999999999999860213356652134538998999977889999999986--999---8998612
Q ss_pred HHH-------------HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHH
Q ss_conf 889-------------99999986198899999974031020544445317-------------5069999999999885
Q gi|254780627|r 236 YFM-------------WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-------------KLIQHEFCHLLNSLLD 289 (502)
Q Consensus 236 ~F~-------------~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~g-------------k~tqee~f~~~n~l~~ 289 (502)
T Consensus 144 ~lTEaGYVGeDVE~ii~~Llq~A-d~dve~A-----e~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLkiiEGt~v 217 (411)
T PRK05342 144 TLTEAGYVGEDVENILLKLLQAA-DYDVEKA-----QRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVA 217 (411)
T ss_pred EECCCCCCCCCHHHHHHHHHHHC-CCCHHHH-----HCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 00126745607999999999982-8889988-----36828885023454247888887776512489999998758714
Q ss_pred C------------------CCEEEEEC---------------------------------------CCCHHHHC--CCCH
Q ss_conf 6------------------98799964---------------------------------------87567613--6303
Q gi|254780627|r 290 S------------------AKQVVAAA---------------------------------------DRPPSELE--SLDP 310 (502)
Q Consensus 290 ~------------------gkqiv~ts---------------------------------------d~~P~~l~--~l~~ 310 (502)
T Consensus 218 ~vp~~ggrkhp~~~~~~idT~nILFI~gGAF~GL~~II~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~DLi~fGlIP 297 (411)
T PRK05342 218 SVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPEDLVKFGLIP 297 (411)
T ss_pred CCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCH
T ss_conf 11888777787765167614717999115533589999863578876778876641100056787627987888738837
Q ss_pred HHHHHHHCCEEEEECCCCHHHHHHHH--------HHHHHHHHHHCCCCCCCHHHHHHHHHHC---CCCHHHHHHHHHHHH
Q ss_conf 45765302115775158889999999--------9999886431168978989999998502---788899999999999
Q gi|254780627|r 311 RIRSRLQGGVSVPLGLHDYEMRFSIL--------KNRLAISQKEDPKLNINEEVLMHVARTV---TTSGRELDGAFNQLV 379 (502)
Q Consensus 311 rL~SR~~~Gl~~~i~~Pd~e~r~~Il--------~~k~~~~~~~~~~~~l~~~v~~~la~~~---~~~vR~Legal~~l~ 379 (502)
T Consensus 298 EfiGRlP--Viv~L~~L~~~~L~~ILtePkNaLikQY~~LF~~dgV~L~Ft~~AL~~IA~~A~~~~tGARgLRsIlE~iL 375 (411)
T PRK05342 298 EFIGRLP--VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDDALEAIAKKAIERKTGARGLRSILEEVL 375 (411)
T ss_pred HHHCCCC--EEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 7614664--05462447999999996587415999999999754967998689999999999984757457799999997
Q ss_pred HHHHH
Q ss_conf 98630
Q gi|254780627|r 380 FRHSF 384 (502)
Q Consensus 380 ~~~~~ 384 (502)
T Consensus 376 ld~MF 380 (411)
T PRK05342 376 LDVMF 380 (411)
T ss_pred HHHHC
T ss_conf 88754