HHsearch alignment for GI: 254780627 and conserved domain: PRK05563
>PRK05563 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.74 E-value=7.8e-07 Score=68.57 Aligned_cols=211 Identities=16% Similarity=0.162 Sum_probs=124.7
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEE---EEEHHHHHH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688168---646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV---YLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~---y~~~e~F~~ 239 (502)
T Consensus 14 ~f~dvv-gQ~~--v~~~L~n~i~~-~~i~-----hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~~ 84 (541)
T PRK05563 14 TFEDVV-GQEH--ITTTLKNQIIN-NRIA-----HAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKINE 84 (541)
T ss_pred CHHHHC-CCHH--HHHHHHHHHHC-CCCC-----EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 776624-8499--99999999984-9932-----0453038799589999999999957999888985751488999856
Q ss_pred H----H--HHHHHCCCHHHHHH---HHH------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 9----9--99986198899999---974------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 R----F--ASAIRDNCALNLKD---SLR------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ~----~--~~a~~~~~~~~fr~---~~r------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
T Consensus 85 g~~~Dv~Eidaas~~gvd~iR~~~~~~~~~p~~~~~Kv~IiDEvhmls-~~a~nallKtlEePp~~~~Filatte--~~- 160 (541)
T PRK05563 85 GLLMDVIEIDAASNNGVDDIREIIENVKYPPQEGKYKVYIMDEVHMLS-QGAVNAFLKTLEEPPSNVIFILATTD--PQ- 160 (541)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHCEECCCCCCEEEEEEECCCCCC-HHHHHHHHHHHHCCCCCCEEEEECCC--CC-
T ss_conf 898873662444447889999999761048767870599997723389-99999999998548777569997698--44-
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
T Consensus 161 --ki~~tI~SRcq---~f~f~~i~~~~i~~~L~~I-----~~~E~i~~~~~al~lIa~~s~GsmRDAlslLdQ~is~~-- 228 (541)
T PRK05563 161 --KLPITILSRCQ---RFDFKRIKVKDIFKRLRKI-----VEEQGIFADDKSLNLIARMSDGAMRDALSILDQAISMG-- 228 (541)
T ss_pred --CCCHHHHHHEE---EEEEEECCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--
T ss_conf --27455674213---5775438999999999999-----99849998789999999745997788999999999835--
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
T Consensus 229 ~~~it~~~v~~~lG 242 (541)
T PRK05563 229 DGKVDYDDVVSMLG 242 (541)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 99866999999968