HHsearch alignment for GI: 254780627 and conserved domain: PRK05563

>PRK05563 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.74  E-value=7.8e-07  Score=68.57  Aligned_cols=211  Identities=16%  Similarity=0.162  Sum_probs=124.7

Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEE---EEEHHHHHH
Q ss_conf             88763288614789999999982410013655555489862788885799999999998630688168---646988899
Q gi|254780627|r  163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV---YLTAEYFMW  239 (502)
Q Consensus       163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~---y~~~e~F~~  239 (502)
T Consensus        14 ~f~dvv-gQ~~--v~~~L~n~i~~-~~i~-----hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~~   84 (541)
T PRK05563         14 TFEDVV-GQEH--ITTTLKNQIIN-NRIA-----HAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKINE   84 (541)
T ss_pred             CHHHHC-CCHH--HHHHHHHHHHC-CCCC-----EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf             776624-8499--99999999984-9932-----0453038799589999999999957999888985751488999856


Q ss_pred             H----H--HHHHHCCCHHHHHH---HHH------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf             9----9--99986198899999---974------0310205444453175069999999999885698799964875676
Q gi|254780627|r  240 R----F--ASAIRDNCALNLKD---SLR------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE  304 (502)
Q Consensus       240 ~----~--~~a~~~~~~~~fr~---~~r------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~  304 (502)
T Consensus        85 g~~~Dv~Eidaas~~gvd~iR~~~~~~~~~p~~~~~Kv~IiDEvhmls-~~a~nallKtlEePp~~~~Filatte--~~-  160 (541)
T PRK05563         85 GLLMDVIEIDAASNNGVDDIREIIENVKYPPQEGKYKVYIMDEVHMLS-QGAVNAFLKTLEEPPSNVIFILATTD--PQ-  160 (541)
T ss_pred             CCCCCEEEECCCCCCCHHHHHHHHHHCEECCCCCCEEEEEEECCCCCC-HHHHHHHHHHHHCCCCCCEEEEECCC--CC-
T ss_conf             898873662444447889999999761048767870599997723389-99999999998548777569997698--44-


Q ss_pred             HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r  305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF  384 (502)
Q Consensus       305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~  384 (502)
T Consensus       161 --ki~~tI~SRcq---~f~f~~i~~~~i~~~L~~I-----~~~E~i~~~~~al~lIa~~s~GsmRDAlslLdQ~is~~--  228 (541)
T PRK05563        161 --KLPITILSRCQ---RFDFKRIKVKDIFKRLRKI-----VEEQGIFADDKSLNLIARMSDGAMRDALSILDQAISMG--  228 (541)
T ss_pred             --CCCHHHHHHEE---EEEEEECCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--
T ss_conf             --27455674213---5775438999999999999-----99849998789999999745997788999999999835--


Q ss_pred             CCCCCHHHHHHHHH
Q ss_conf             24687788999998
Q gi|254780627|r  385 APILTAEIADELLS  398 (502)
Q Consensus       385 ~~~~~~~~~~~~l~  398 (502)
T Consensus       229 ~~~it~~~v~~~lG  242 (541)
T PRK05563        229 DGKVDYDDVVSMLG  242 (541)
T ss_pred             CCCCCHHHHHHHHC
T ss_conf             99866999999968