HHsearch alignment for GI: 254780627 and conserved domain: PRK05564
>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=97.99 E-value=0.0023 Score=43.95 Aligned_cols=179 Identities=15% Similarity=0.163 Sum_probs=106.2
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC---CEEEEEHHHHHH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688---168646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL---RVVYLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~---~v~y~~~e~F~~ 239 (502)
T Consensus 2 ~f~~ii-Gq~~-i~~~L~~~i~~--~rl~-----HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~~-- 70 (313)
T PRK05564 2 SFRTII-GHEN-IKNRIDNSIIK--GKFS-----HASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPINK-- 70 (313)
T ss_pred CHHHCC-CHHH-HHHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC--
T ss_conf 832326-8299-99999999987--9987-----50432799985099999999999828997788986588633225--
Q ss_pred HHHHHHHCCCHHHHH---HHH--H----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCH
Q ss_conf 999998619889999---997--4----0310205444453175069999999999885698799964875676136303
Q gi|254780627|r 240 RFASAIRDNCALNLK---DSL--R----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 (502)
Q Consensus 240 ~~~~a~~~~~~~~fr---~~~--r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~ 310 (502)
T Consensus 71 ------~~I~vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m~-~~AaNALLKtLEEPP-~~t~fIL~t~~~~----~lLp 138 (313)
T PRK05564 71 ------KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYKSEKMT-EQAQNAFLKTIEEPP-KGVFIILLCENLE----QILD 138 (313)
T ss_pred ------CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHC-HHHHHHHHHCCCCCC-CCEEEEEEECCHH----HCCC
T ss_conf ------699989999999998408625895699980777758-999999845503689-9858998649835----4757
Q ss_pred HHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 457653021157751588899999999999886431168978989999998502788899999999
Q gi|254780627|r 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 (502)
Q Consensus 311 rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~ 376 (502)
T Consensus 139 TI~SRCQ---~~~f~~l~~~~i~~~L~~~---------~~~~~~~~~~~~~~~s~G~~~~a~~~~~ 192 (313)
T PRK05564 139 TIKSRCQ---IYKLNRLSKEDIEKFISYK---------YNDIDEENKNSAIAFSDGIPGKVEKFIE 192 (313)
T ss_pred HHHCCCE---EEECCCCCHHHHHHHHHHH---------CCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 7870653---5668998999999999986---------2589999999999982998799999840