HHsearch alignment for GI: 254780627 and conserved domain: PRK05574
>PRK05574 holA DNA polymerase III subunit delta; Reviewed.
Probab=97.90 E-value=0.00055 Score=48.35 Aligned_cols=270 Identities=15% Similarity=0.098 Sum_probs=150.5
Q ss_pred CEE-EEECCCCCCHHHHHHHHHHHHHHH-CCCCCEEEEEHHHHH-HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 548-986278888579999999999863-068816864698889-99999986198899999974031020544445317
Q gi|254780627|r 197 NPL-FIHASVGLGKTHLLQAIANASIKR-QPNLRVVYLTAEYFM-WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 (502)
Q Consensus 197 NPL-fi~G~~GlGKTHLl~ai~~~~~~~-~~~~~v~y~~~e~F~-~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~g 273 (502)
T Consensus 16 ~pvyli~G~e~~li~~~~~~i~~~~~~~~~~~~n~~~~d~~~~~~~~l~~~~~t~sl--f----~~krlViv~~~~~~~~ 89 (336)
T PRK05574 16 APVYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTVDGSETDWDDVLEACQSLPL--F----SDRKLVELRLPEGLTG 89 (336)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCC--C----CCCEEEEEECCCCCCC
T ss_conf 867999858699999999999998607786530589971686999999998648997--7----8975999988876653
Q ss_pred CCHHHH---HHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHH--HH----HCCEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 506999---99999998856987999648756761363034576--53----0211577515888999999999998864
Q gi|254780627|r 274 KLIQHE---FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS--RL----QGGVSVPLGLHDYEMRFSILKNRLAISQ 344 (502)
Q Consensus 274 k~tqee---~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~S--R~----~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~ 344 (502)
T Consensus 90 k~~~~~l~~l~~~l~~~~~~~~lvli~~~------~~~d~~~k~~k~~k~l~~~~~~i~~~~~~~~~l~~~i~~~----- 158 (336)
T PRK05574 90 KKGEEALKRLEAYLENPLPHTDLLLLAPL------PKLDKRKEKSAWFKALKKKAVVVEAQTPKEAELPQWIQQR----- 158 (336)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEC------CCCCHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHH-----
T ss_conf 11379999999987079999769999877------8633688889999999848079980699989999999999-----
Q ss_pred HHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH---
Q ss_conf 31168978989999998502788899999999999986302468778899999876303788757989999999998---
Q gi|254780627|r 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKH--- 421 (502)
Q Consensus 345 ~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~I~~~V~~~--- 421 (502)
T Consensus 159 ~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~-~~~It~~dV~~~v~~~------~~~~~f~L~dai~~~~~~ 231 (336)
T PRK05574 159 LKQQGLRIDAAALQLLAERVEGNLLALAQEIEKLALLYP-DGKITLEDVEEAVPDS------ARFDVFDLVDAILAGKIA 231 (336)
T ss_pred HHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHCCC------CCCCHHHHHHHHHCCCHH
T ss_conf 998499989899999999721139999999999998378-8887899999986164------335679999999878999
Q ss_pred --HCCCHHHHHCCCC-CHHHC--HHHHHH-HHHHHHH--CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH--CCHHHHH
Q ss_conf --0999999408887-74014--457999-9999985--15687899988479843799999999999986--1699999
Q gi|254780627|r 422 --YNISRNDLLSNRR-VRTVV--RPRQVA-MYLSKIM--TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE--TDITLKK 491 (502)
Q Consensus 422 --~~i~~~~l~s~~R-~~~i~--~~Rqia-myL~r~~--t~~s~~~IG~~fg~rdHsTV~~a~~ki~~~~~--~d~~~~~ 491 (502)
T Consensus 232 ~al~~l~-~l~~~~~~~~~il~~l~~~~r~l~~ik~~~~~g~~~~~i~~~l~i--~~~~---~~~~~~~~~~~s~~~L~~ 305 (336)
T PRK05574 232 RALRILD-GLRLEGEEPIKLLAALQREFRLLLQLKILLQQGYPLQQLFKELRV--WPYR---RKLALRALQRLSLKQLEQ 305 (336)
T ss_pred HHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC--CHHH---HHHHHHHHHCCCHHHHHH
T ss_conf 9999999-999779972999999999999999999998769999999988399--9999---999999997299999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780627|r 492 EVELL 496 (502)
Q Consensus 492 ~i~~i 496 (502)
T Consensus 306 ~l~~l 310 (336)
T PRK05574 306 AIQLL 310 (336)
T ss_pred HHHHH
T ss_conf 99999