HHsearch alignment for GI: 254780627 and conserved domain: PRK05636
>PRK05636 replicative DNA helicase; Provisional.
Probab=94.19 E-value=0.53 Score=27.15 Aligned_cols=100 Identities=16% Similarity=0.253 Sum_probs=56.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE----EHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 8986278888579999999999863068816864----698889999999861988999999740310205444453175
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL----TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~----~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk 274 (502)
T Consensus 270 iIiAARPsmGKTalAlnia~n~A~~~-g~~v~~fSLEMs~~ql~~Rlla~~s~V~~~~ir-----------------~g~ 331 (507)
T PRK05636 270 IIVAARPGVGKSTIALDFMRSASIKN-NKASVIFSLEMSKSEIVMRLLSAEAEVRLADMR-----------------GGK 331 (507)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHH-----------------CCC
T ss_conf 99973787866899999999999876-993799715699899999999984798878885-----------------588
Q ss_pred CHHHH---HHHHHHHHHHCCCEEEEECCC---CHHHHCCCCHHHHHHHHCC
Q ss_conf 06999---999999988569879996487---5676136303457653021
Q gi|254780627|r 275 LIQHE---FCHLLNSLLDSAKQVVAAADR---PPSELESLDPRIRSRLQGG 319 (502)
Q Consensus 275 ~tqee---~f~~~n~l~~~gkqiv~tsd~---~P~~l~~l~~rL~SR~~~G 319 (502)
T Consensus 332 l~~~~~~~l~~a~~~l~~~p---l~IdD~~~lti~~Ira~aRrlk~~~~l~ 379 (507)
T PRK05636 332 MDEDAWEKLVQRLGKIAQAP---IFIDDSANLTMMEIRSKARRLKQKHDLK 379 (507)
T ss_pred CCHHHHHHHHHHHHHHHHCC---EEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 78899999999999986198---8998499976999999999998617999