HHsearch alignment for GI: 254780627 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.43 E-value=0.00054 Score=48.42 Aligned_cols=111 Identities=21% Similarity=0.249 Sum_probs=77.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH-------HHHHHHHH-----CCCHHHH---HHHHHHCCH
Q ss_conf 48986278888579999999999863068816864698889-------99999986-----1988999---999740310
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-------WRFASAIR-----DNCALNL---KDSLRNIDL 262 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~-------~~~~~a~~-----~~~~~~f---r~~~r~~Dv 262 (502)
T Consensus 212 vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~~dl 291 (412)
T PRK05703 212 VVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLANCDL 291 (412)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCE
T ss_conf 69998888875676999999999997299817999837677779999999999719737984799999999987158997
Q ss_pred HHHHHHHHHCCC----CH-HHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHH
Q ss_conf 205444453175----06-999999999988569879996487567613630345
Q gi|254780627|r 263 LLIDDMQFLQGK----LI-QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 (502)
Q Consensus 263 LliDDiqfl~gk----~t-qee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL 312 (502)
T Consensus 292 ILIDT----aG~s~~d~~~~~eL~~~~~~~~~~~~~LVlsat~~~~dl~~i~~~f 342 (412)
T PRK05703 292 ILIDT----AGRSQRDPRLISELKALIENSKPIDVYLVLSATTKYRDLKDIVKHF 342 (412)
T ss_pred EEEEC----CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 99968----9889789999999999986248871899975989989999999984