HHsearch alignment for GI: 254780627 and conserved domain: PRK05818
>PRK05818 DNA polymerase III subunit delta'; Validated.
Probab=94.45 E-value=0.47 Score=27.52 Aligned_cols=179 Identities=12% Similarity=0.093 Sum_probs=92.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-------------------HCCCCCEEEEEHHHHHHHHHHHHHCCCH----HHH
Q ss_conf 54898627888857999999999986-------------------3068816864698889999999861988----999
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIK-------------------RQPNLRVVYLTAEYFMWRFASAIRDNCA----LNL 253 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~-------------------~~~~~~v~y~~~e~F~~~~~~a~~~~~~----~~f 253 (502)
T Consensus 9 halLl~~~~G~~~~~~~~~~~k~LlC~~~~~PCG~C~sC~~i~~g~HPD~--~~i~pe~------~sIkieqir~li~~l 80 (262)
T PRK05818 9 HPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDF--YLIFDQK------NPIKKEDALSIINKL 80 (262)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCE--EEEECCC------CCCCHHHHHHHHHHH
T ss_conf 50566448776469999999998622899999988862786755899977--9971664------557798999999998
Q ss_pred HHHH-H--HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHH
Q ss_conf 9997-4--031020544445317506999999999988569879996487567613630345765302115775158889
Q gi|254780627|r 254 KDSL-R--NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 (502)
Q Consensus 254 r~~~-r--~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e 330 (502)
T Consensus 81 ~~~s~e~~g~KV~II~~Ae~Mt-~~AANALLKtLEEP-p~nt~fIL~t~~~~----~LLPTIrSRC~~~~~~~~---~~~ 151 (262)
T PRK05818 81 NRPSVESNGKKIYIIYGIEKLN-KQSANSLLKLIEEP-PKNTYGIFTTRNEN----NILNTILSRCVQYVVLSK---EKK 151 (262)
T ss_pred HHCCCCCCCCEEEEECCHHHHC-HHHHHHHHHHHCCC-CCCEEEEEEECCHH----HCCCHHHHHCCCCCCCCH---HHH
T ss_conf 2114002884899987778749-99999999861289-87838999738814----373088877014466643---466
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999999886431168978989999998502-78889999999999998630246877889999987
Q gi|254780627|r 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTV-TTSGRELDGAFNQLVFRHSFAPILTAEIADELLSH 399 (502)
Q Consensus 331 ~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~-~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~ 399 (502)
T Consensus 152 ~~~~~~~~~~-----~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~~~i~~~--n~~~~~~~~~~l~~~ 214 (262)
T PRK05818 152 VPFKVESNDR-----YFQYILLSFYSVDEQLQAYNNGSFSKLKNIIETLINKK--NKLIQIHKAWILFKT 214 (262)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCCEEHHHHHHHHHC
T ss_conf 7888874088-----89876410110799998861676888999999998756--884339999999831