HHsearch alignment for GI: 254780627 and conserved domain: PRK05896
>PRK05896 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.91 E-value=5.1e-08 Score=76.99 Aligned_cols=211 Identities=15% Similarity=0.138 Sum_probs=131.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE---EEHHHHHH
Q ss_conf 887632886147899999999824100136555554898627888857999999999986306881686---46988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY---LTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y---~~~e~F~~ 239 (502)
T Consensus 14 ~F~eII-GQe~-iv~~L~nAI~~--~Ria-----HAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC~~I~~ 84 (613)
T PRK05896 14 NFKQII-GQEL-IKKILVNAILN--NKLT-----HAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINT 84 (613)
T ss_pred CHHHHC-CCHH-HHHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 765523-8299-99999999984--9976-----2277558998488999999999966999999998888878999856
Q ss_pred H------HHHHHHCCCHHHHHHHHH---------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 9------999986198899999974---------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 R------FASAIRDNCALNLKDSLR---------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ~------~~~a~~~~~~~~fr~~~r---------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
T Consensus 85 g~h~DviEIdaasn~gIDeIReLie~~~~~P~~gkyKV~IIDEah~Ln-~~AaNALLKtLEEPP~~viFIL~Tte--p~- 160 (613)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-TSAWNALLKTLEEPPKHVVFIFATTE--FQ- 160 (613)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCC-HHHHHHHHHHCCCCCCCCEEEEEECC--HH-
T ss_conf 999986884065557889999999970858757994599981622179-99999999853489878379998288--15-
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
T Consensus 161 --KLLpTIlSRCQrf~Fkri~~~~I~~~L~~I--------~~kE~i~ie~~AL~~Ia~~adGs~RDAlslLdQ~~~~~~- 229 (613)
T PRK05896 161 --KIPLTIISRCQRYNFKKLNNSELQELLKSI--------AKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKN- 229 (613)
T ss_pred --HCCHHHHHCCCCEECCCCCHHHHHHHHHHH--------HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-
T ss_conf --493766403550017889989999999999--------997399878999999999768848789889999998356-
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
T Consensus 230 -~~it~~~v~~~~g 242 (613)
T PRK05896 230 -KKIDIEDINKTFG 242 (613)
T ss_pred -CCCCHHHHHHHHC
T ss_conf -8862999999967