HHsearch alignment for GI: 254780627 and conserved domain: PRK06090
>PRK06090 DNA polymerase III subunit delta'; Validated.
Probab=96.56 E-value=0.017 Score=37.80 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=79.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC------------------EEEEEHHHHHHH-HHHHHHCCCHHHHH---
Q ss_conf 54898627888857999999999986306881------------------686469888999-99998619889999---
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLR------------------VVYLTAEYFMWR-FASAIRDNCALNLK--- 254 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~------------------v~y~~~e~F~~~-~~~a~~~~~~~~fr--- 254 (502)
T Consensus 26 HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~pe~~~k~I~vd~IR~--l~~~~~~~ 103 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPDLHVIKPEKEGKSITVEQIRQ--CNRLAQES 103 (319)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHH--HHHHHHHC
T ss_conf 0676679998579999999999980899999988778779998758999823661233567687999999--99997545
Q ss_pred HHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHH
Q ss_conf 99740310205444453175069999999999885698799964875676136303457653021157751588899999
Q gi|254780627|r 255 DSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 (502)
Q Consensus 255 ~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~ 334 (502)
T Consensus 104 ~~~g~~KV~iI~~ae~m~-~~AaNALLKtLEE-Pp~~t~fiL~t~~~~----~ll~TI~SRCq---~~~l~~p~~~~~~~ 174 (319)
T PRK06090 104 SQLGGYRLFVIEPADAMN-ESASNALLKTLEE-PAPNCLFLLVTHNQK----RLLPTIVSRCQ---QWVVTPPSTDQAMQ 174 (319)
T ss_pred CCCCCCEEEEECCHHHCC-HHHHHHHHHHHCC-CCCCEEEEEEECCHH----HCCCCHHHCCC---CCCCCCCCHHHHHH
T ss_conf 210693699981444349-9999999998428-998838998768512----08641876144---50289959999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780627|r 335 ILKNR 339 (502)
Q Consensus 335 Il~~k 339 (502)
T Consensus 175 WL~~q 179 (319)
T PRK06090 175 WLKGQ 179 (319)
T ss_pred HHHHH
T ss_conf 99884