HHsearch alignment for GI: 254780627 and conserved domain: PRK06305
>PRK06305 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.81 E-value=3e-07 Score=71.50 Aligned_cols=211 Identities=17% Similarity=0.185 Sum_probs=129.7
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC----EEEEEHHHHH
Q ss_conf 887632886147899999999824100136555554898627888857999999999986306881----6864698889
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR----VVYLTAEYFM 238 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~----v~y~~~e~F~ 238 (502)
T Consensus 15 ~F~dvV-GQ~~vv-~~L~nai~~--~ri~-----HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~~I~ 85 (462)
T PRK06305 15 TFSEIL-GQDAVV-TVLKNALRF--NRAA-----HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICKEIS 85 (462)
T ss_pred CHHHHC-CCHHHH-HHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 876604-909999-999999984--9976-----2343038998599999999999967999988889887668889986
Q ss_pred HH------HHHHHHCCCHHHHHH---H--HH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 99------999986198899999---9--74----031020544445317506999999999988569879996487567
Q gi|254780627|r 239 WR------FASAIRDNCALNLKD---S--LR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 (502)
Q Consensus 239 ~~------~~~a~~~~~~~~fr~---~--~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~ 303 (502)
T Consensus 86 ~g~~~DViEiDaAs~~gVddIRel~e~v~~~P~~~~yKVyIIDEvhmLs-~~AfNALLKtLEEPP~~v~FILaTTe--~~ 162 (462)
T PRK06305 86 SGTSLDVIEIDGASHRGIEDIRQINETVLFTPSKSQYKIYIIDEVHMLT-KEAFNSLLKTLEEPPQHVKFFLATTE--IH 162 (462)
T ss_pred CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCC-HHHHHHHHHHHHCCCCCEEEEEEECC--HH
T ss_conf 3899986864355344668999999771008867750599981521179-99999999986189877499998188--14
Q ss_pred HHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 61363034576530211577515888999999999998864311689789899999985027888999999999999863
Q gi|254780627|r 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 (502)
Q Consensus 304 ~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~ 383 (502)
T Consensus 163 ---KIp~TIlSRCQ---rf~F~~i~~~~I~~~L~~I-----~~~E~i~~e~~AL~lIA~~a~GsmRDAlslLDQ~i~~~- 230 (462)
T PRK06305 163 ---KIPGTILSRCQ---KMHLKRIPEETIIDKLALI-----AQQDGIETSREALLPIARAAQGSLRDAESLYDYVVGLF- 230 (462)
T ss_pred ---HCCHHHHHHHH---EEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-
T ss_conf ---28547876540---2332579999999999999-----99839985999999999985895878999999999847-
Q ss_pred HCCCCCHHHHHHHHH
Q ss_conf 024687788999998
Q gi|254780627|r 384 FAPILTAEIADELLS 398 (502)
Q Consensus 384 ~~~~~~~~~~~~~l~ 398 (502)
T Consensus 231 -~~~it~~~V~~~lG 244 (462)
T PRK06305 231 -PKSLSPDTVAKALG 244 (462)
T ss_pred -CCCCCHHHHHHHHC
T ss_conf -99868999999868