HHsearch alignment for GI: 254780627 and conserved domain: PRK06647
>PRK06647 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.83 E-value=1.3e-06 Score=66.91 Aligned_cols=211 Identities=16% Similarity=0.164 Sum_probs=130.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCC--EEEEEHHHHHH
Q ss_conf 887632886147899999999824100136555554898627888857999999999986306-881--68646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP-NLR--VVYLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~-~~~--v~y~~~e~F~~ 239 (502)
T Consensus 14 ~F~dvv-GQe~--vv~~L~nai~~-~rl~-----HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~i~~ 84 (560)
T PRK06647 14 DFNSLE-GQDF--VVETLKHSIEK-NKIA-----NAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKSIDN 84 (560)
T ss_pred CHHHHC-CCHH--HHHHHHHHHHC-CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 654403-9499--99999999974-9977-----4366328998789999999999965999999888878878888745
Q ss_pred H------HHHHHHCCCHHHHHH---HHH------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 9------999986198899999---974------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 R------FASAIRDNCALNLKD---SLR------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ~------~~~a~~~~~~~~fr~---~~r------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
T Consensus 85 g~~~DviEidaasn~~VddIR~l~e~v~~~P~~~~yKV~IIDEahmLt-~~A~NALLKtLEEPP~~~~FILaTte--~~- 160 (560)
T PRK06647 85 DSSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-NSAFNALLKTIEEPPPYIVFIFATTE--VH- 160 (560)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCC-HHHHHHHHHHHHCCCCCEEEEEECCC--HH-
T ss_conf 999875764364548889999999986328766870699964656559-99999999986348875599997799--47-
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
T Consensus 161 --KI~~TI~SRCQ---~f~Fk~i~~~~I~~~L~~I-----~~~E~i~~e~~AL~lIa~~a~Gs~RDalslldq~i~~~-- 228 (560)
T PRK06647 161 --KLPATIKSRCQ---HFNFRLLSLEKIYEMLKKV-----CLEDDIKYEDEALKWIAYKSGGSVRDAYTLFDQIVSFS-- 228 (560)
T ss_pred --HCHHHHHHHHE---EEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--
T ss_conf --68489996510---4105559999999999999-----98679887999999999977895888999999999607--
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
T Consensus 229 ~~~i~~~~v~~~lG 242 (560)
T PRK06647 229 NSDITLEQIRSKMG 242 (560)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 99778999999868