HHsearch alignment for GI: 254780627 and conserved domain: PRK06964
>PRK06964 DNA polymerase III subunit delta'; Validated.
Probab=94.11 E-value=0.55 Score=27.03 Aligned_cols=131 Identities=17% Similarity=0.201 Sum_probs=75.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH----------------------HCCCCCEEEEEHHHHHHH--------------
Q ss_conf 54898627888857999999999986----------------------306881686469888999--------------
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIK----------------------RQPNLRVVYLTAEYFMWR-------------- 240 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~----------------------~~~~~~v~y~~~e~F~~~-------------- 240 (502)
T Consensus 22 HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~~~HPD~~--~i~Pe~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 22 HALLLHGQAGIGKLAFAQHLAQGLLCETPQPNGEPCGTCAACTWFAQGNHPDYR--IVRPEALAAEAPGAADDAKAADAD 99 (342)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEE--EECCCHHCCCCCCCCCHHHHHHHH
T ss_conf 057657999867999999999998389999888978677778888627999745--534002102233321001011122
Q ss_pred -HHHHHH----CCCHHHHHH---HH--H----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf -999986----198899999---97--4----031020544445317506999999999988569879996487567613
Q gi|254780627|r 241 -FASAIR----DNCALNLKD---SL--R----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 (502)
Q Consensus 241 -~~~a~~----~~~~~~fr~---~~--r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~ 306 (502)
T Consensus 100 ~~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~m-n~~aaNalLK~LEEPp-~~~~~iL~~~~~~---- 173 (342)
T PRK06964 100 EGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEAL-NVAAANALLKTLEEPP-PGVVFLLVSARID---- 173 (342)
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH-CHHHHHHHHHHHCCCC-CCEEEEEEECCHH----
T ss_conf 210123565564549999999999700754588449998277873-8999999999723798-7848999869925----
Q ss_pred CCCHHHHHHHHCCEEEEECCCCHHHHHHHHHH
Q ss_conf 63034576530211577515888999999999
Q gi|254780627|r 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 (502)
Q Consensus 307 ~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~ 338 (502)
T Consensus 174 ~llpTI~SRcq---~~~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 174 RLLPTILSRCR---QWPMTVPAPEAAAAWLAA 202 (342)
T ss_pred HCCHHHHHCCE---EECCCCCCHHHHHHHHHH
T ss_conf 48368876764---302899599999999987