HHsearch alignment for GI: 254780627 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.08 E-value=0.0036 Score=42.56 Aligned_cols=109 Identities=20% Similarity=0.273 Sum_probs=70.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH-------HHHHHHHH-----CCCHHHHH---HHHHHCCHHH
Q ss_conf 986278888579999999999863068816864698889-------99999986-----19889999---9974031020
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-------WRFASAIR-----DNCALNLK---DSLRNIDLLL 264 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~-------~~~~~a~~-----~~~~~~fr---~~~r~~DvLl 264 (502)
T Consensus 180 alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~~dlIL 259 (404)
T PRK06995 180 ALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRNKHIVL 259 (404)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEE
T ss_conf 98668887637589999999999838983799976875478999999999875955999599999999999708999999
Q ss_pred HHHHHHHCCC----CHHHHHHHHHHHH-HHCCCEEEEECCCCHHHHCCCCHHH
Q ss_conf 5444453175----0699999999998-8569879996487567613630345
Q gi|254780627|r 265 IDDMQFLQGK----LIQHEFCHLLNSL-LDSAKQVVAAADRPPSELESLDPRI 312 (502)
Q Consensus 265 iDDiqfl~gk----~tqee~f~~~n~l-~~~gkqiv~tsd~~P~~l~~l~~rL 312 (502)
T Consensus 260 IDT----aGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f 308 (404)
T PRK06995 260 IDT----VGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQAY 308 (404)
T ss_pred EEC----CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 809----9989768889999999973578852899977989999999999984