HHsearch alignment for GI: 254780627 and conserved domain: PRK07003
>PRK07003 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.33 E-value=3.5e-05 Score=56.86 Aligned_cols=211 Identities=15% Similarity=0.152 Sum_probs=120.0
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH---HHHHH
Q ss_conf 887632886147899999999824100136555554898627888857999999999986306881686469---88899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA---EYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~---e~F~~ 239 (502)
T Consensus 14 ~f~e~v-GQ~~v-~~~l~nal~~--~rl~-----haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C~~i~~ 84 (816)
T PRK07003 14 DFASLV-GQEHV-VRALTHALDG--GRLH-----HAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE 84 (816)
T ss_pred CHHHHC-CCHHH-HHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 576623-84999-9999999970--9863-----1475117898888899999999867899999897877555787755
Q ss_pred ----HH--HHHHHCCCHHHHHHHHH---------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf ----99--99986198899999974---------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 ----RF--ASAIRDNCALNLKDSLR---------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ----~~--~~a~~~~~~~~fr~~~r---------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
T Consensus 85 g~~~d~iEiDaAS~~~vd~~r~l~~~~~y~p~~~r~KvyiiDEvHmls~-~afnalLKtlEepP~hv~FilaTTd--~~k 161 (816)
T PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-HAFNAMLKTLEEPPPHVKFILATTD--PQK 161 (816)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCH-HHHHHHHHHHCCCCCCEEEEEECCC--HHH
T ss_conf 8877547863554357689999998622478667447999841543399-9999999840379866489995588--011
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
T Consensus 162 ---~p~tilSRc~~---f~l~~~~~~~i~~~l~~i-----~~~E~i~~e~~al~lia~~a~GsmRDalsl~dQaia~~~- 229 (816)
T PRK07003 162 ---IPVTVLSRCLQ---FNLKQMPAGHIVSHLERI-----LGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA- 229 (816)
T ss_pred ---CCHHHHHHHHH---CCCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-
T ss_conf ---52889877765---223679999999999999-----998299779999999999767737888859999998469-
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
T Consensus 230 -g~~~~~~v~~mLG 242 (816)
T PRK07003 230 -NEVTETAVSGMLG 242 (816)
T ss_pred -CCCCHHHHHHHHC
T ss_conf -9737999999858