HHsearch alignment for GI: 254780627 and conserved domain: PRK07132
>PRK07132 DNA polymerase III subunit delta'; Validated.
Probab=96.02 E-value=0.16 Score=30.86 Aligned_cols=251 Identities=12% Similarity=0.144 Sum_probs=121.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCC--------CEEEEEHHHHHHHHHHHHHCCC----HHHHHH-H-HHH-CCHH
Q ss_conf 89862788885799999999998630688--------1686469888999999986198----899999-9-740-3102
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNL--------RVVYLTAEYFMWRFASAIRDNC----ALNLKD-S-LRN-IDLL 263 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~--------~v~y~~~e~F~~~~~~a~~~~~----~~~fr~-~-~r~-~DvL 263 (502)
T Consensus 23 YLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~id~~~------~~i~~~~i~~~i~~~~~~~~~~~~~Kv~ 96 (303)
T PRK07132 23 FLLKSNYNNDLDESILYFLNKFNNLQSLNLNLEELPYNIFLFDIFD------EDLSKEEFLSAIEKFSFSSFVSNQKKIL 96 (303)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCC------CCHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 8867899867999999999997299878887545653230413322------2001688999999997366556870699
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 05444453175069999999999885698799964875676136303457653021157751588899999999999886
Q gi|254780627|r 264 LIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 (502)
Q Consensus 264 liDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~ 343 (502)
T Consensus 97 IIdea~~lt-~~A~NaLLKtLEEPp~-~~~fil~t~~~-~---~il~TI~SRCq---~~~f~~~~~~~i~~~l~e~---- 163 (303)
T PRK07132 97 IIKNIEKTS-NSSLNALLKTIEEPSK-NTYFLLTTKNI-N---KVIPTIVSRCQ---VINVKEPDQQKILAKLLSQ---- 163 (303)
T ss_pred EEECHHHCC-HHHHHHHHHHCCCCCC-CEEEEEEECCH-H---HCCHHHHHCCE---EEECCCCCHHHHHHHHHHC----
T ss_conf 981655339-9999999987038986-84899972882-4---38377863665---6637889999999999864----
Q ss_pred HHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC---------CCCHHHH
Q ss_conf 4311689789899999985027888999999999999863024687788999998763037887---------5798999
Q gi|254780627|r 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETK---------KMRIEDI 414 (502)
Q Consensus 344 ~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~i~~~~I 414 (502)
T Consensus 164 -------~~~~e~~~~~a~~~~-n---~~~a~~~~----~---~e~~~~~~~~~~~l~~~~~~~~~~~~fl~~~~~~~~~ 225 (303)
T PRK07132 164 -------NKEKEFEKFYAYIFK-N---FEDAIKYI----S---KISENLVKKFIKALNKSLKEKYSLLIFLNEKLNKENA 225 (303)
T ss_pred -------CCCCHHHHHHHHHHC-C---HHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------775278999999974-7---58899998----6---4239999999999998741147899999988778479
Q ss_pred --HHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf --999999809999994088877401445799999999851568789998847984379999999999998616999999
Q gi|254780627|r 415 --QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 (502)
Q Consensus 415 --~~~V~~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki~~~~~~d~~~~~~ 492 (502)
T Consensus 226 ~~l~~ll~~~---~~~i~~~~~~~~~~~~k~~~~~~~-------~~~~~~-----~~~~ii~~id~~~~~L~aNvNF~L~ 290 (303)
T PRK07132 226 LFLVKLLLFY---FKSIFLNKKKKKIKNSKKTFLFEK-------YKEIKI-----SFYKVMTSIDEFLTKLEQNENFFIQ 290 (303)
T ss_pred HHHHHHHHHH---HHHHHHHHCCHHHHHHHHHHHHHH-------HHHHHH-----HHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999999999---999988601001688998999999-------988887-----8999999999999988703488999
Q ss_pred HHHHHHHHC
Q ss_conf 999998742
Q gi|254780627|r 493 VELLKRLIS 501 (502)
Q Consensus 493 i~~i~~~i~ 501 (502)
T Consensus 291 ~E~mll~I~ 299 (303)
T PRK07132 291 KQAFLLKIN 299 (303)
T ss_pred HHHHHHHHH
T ss_conf 999999999