HHsearch alignment for GI: 254780627 and conserved domain: PRK07276
>PRK07276 DNA polymerase III subunit delta'; Validated.
Probab=91.00 E-value=1.4 Score=24.21 Aligned_cols=184 Identities=16% Similarity=0.261 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 31020544445317506999999999988569879996487567613630345765302115775158889999999999
Q gi|254780627|r 260 IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 (502)
Q Consensus 260 ~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k 339 (502)
T Consensus 105 ~KV~II~~Ad~mt-~~AaNaLLK~LEEPp~-~t~~iLlt~~~~----~lLpTI~SRCQ---~i~f-p~~~~~l~~~l--- 171 (290)
T PRK07276 105 RQVFIIKDADKMH-VNAANSLLKVIEEPQS-EIYIFLLTNDEN----KVLPTIKSRTQ---IFHF-PKNEAYLYQLL--- 171 (290)
T ss_pred EEEEEECCHHHCC-HHHHHHHHHHHCCCCC-CCEEEEEECCHH----HCCHHHHHCCC---CCCC-CCCHHHHHHHH---
T ss_conf 2799977656529-9999999997038988-837998879925----49378873660---1028-99679999999---
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 98864311689789899999985027888999999999999863024687788999998763037887579899999999
Q gi|254780627|r 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 (502)
Q Consensus 340 ~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~I~~~V~ 419 (502)
T Consensus 172 ------~~~--gi~~~~a~~la~-~~~~~~~a----~~l~~~~~f~~--~~~~~~~~~~~l~~~---~~~~~l~v~~~~- 232 (290)
T PRK07276 172 ------EEK--GLLKTQAKLLAK-LAQSTSEA----EKLAQNSKFLE--LIDQAERFVSILLKD---QDQAYLQVARLV- 232 (290)
T ss_pred ------HHC--CCCHHHHHHHHH-HHCCHHHH----HHHHHCHHHHH--HHHHHHHHHHHHHCC---CCHHHHHHHHHH-
T ss_conf ------986--998679999999-96599999----99872548999--999999999999808---827799999999-
Q ss_pred HHHCCCHHHHHCCCCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 98099999940888774014457999999998515687899988479843799999999999986169999999999
Q gi|254780627|r 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 (502)
Q Consensus 420 ~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki~~~~~~d~~~~~~i~~i 496 (502)
T Consensus 233 --------~l~~~k~~q~~~l-~ll~l~~~~~~~~~~------------~~~~L~~il~ak~~l~aNVnfq~~lE~L 288 (290)
T PRK07276 233 --------QLADDKEEQDQVF-TLLTLLLAKERAQVT------------PRTQLEAVYQARKMWQSNVSFQNALEYM 288 (290)
T ss_pred --------HHHCCHHHHHHHH-HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf --------8632288999999-999999998760789------------9999999999999998157999999997