HHsearch alignment for GI: 254780627 and conserved domain: PRK07940
>PRK07940 DNA polymerase III subunit delta'; Validated.
Probab=95.87 E-value=0.075 Score=33.18 Aligned_cols=146 Identities=18% Similarity=0.160 Sum_probs=86.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCC------------------CCEEEEEHHHHHHHHHHHHHCCCHHHHHHH---
Q ss_conf 48986278888579999999999863068------------------816864698889999999861988999999---
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPN------------------LRVVYLTAEYFMWRFASAIRDNCALNLKDS--- 256 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~------------------~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~--- 256 (502)
T Consensus 41 AyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~i~~g~hpDv~~i~p~~~------~i~id~iR~l~~~~~~ 114 (395)
T PRK07940 41 AWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRTVLAGTHPDVRVVVPEGL------SIGVDEVREIVQIAAR 114 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCC------CCCHHHHHHHHHHHHH
T ss_conf 3763689987889999999999669999999998787899987689987189826877------6889999999999852
Q ss_pred --HH-HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHH
Q ss_conf --74-031020544445317506999999999988569879996487567613630345765302115775158889999
Q gi|254780627|r 257 --LR-NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 (502)
Q Consensus 257 --~r-~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~ 333 (502)
T Consensus 115 ~p~~~~~kv~ii~~a~~m~-~~a~NalLKtLEEPp~~-~~fiL~t~~-~~---~llpTI~SRc---q~~~f~~~~~~~i~ 185 (395)
T PRK07940 115 RPTTGRWRIVVIEDADRLT-ERAANALLKAVEEPPPR-TVWLLCAPS-VE---DVLPTIRSRC---RHVALRTPSVEAVA 185 (395)
T ss_pred CCCCCCCEEEEEECHHHHC-HHHHHHHHHHHCCCCCC-EEEEEEECC-HH---HHHHHHHHHH---EECCCCCCCHHHHH
T ss_conf 7303795599980778748-99999999852178888-699987399-78---7446887440---00237999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 99999998864311689789899999985027888
Q gi|254780627|r 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 (502)
Q Consensus 334 ~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~v 368 (502)
T Consensus 186 ~~L~~~----------~gi~~~~A~~aA~~s~G~i 210 (395)
T PRK07940 186 DVLVRR----------DGVDPETAQWAARASGGHI 210 (395)
T ss_pred HHHHHC----------CCCCHHHHHHHHHHHCCCH
T ss_conf 999870----------1999899999999808988