HHsearch alignment for GI: 254780627 and conserved domain: PRK07994
>PRK07994 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.15 E-value=0.0004 Score=49.34 Aligned_cols=211 Identities=18% Similarity=0.183 Sum_probs=125.8
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCCE--EEEEHHHHHH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630-68816--8646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-PNLRV--VYLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-~~~~v--~y~~~e~F~~ 239 (502)
T Consensus 14 ~f~~~v-GQ~~v-~~~l~na~~~--~r~~-----haylf~G~rG~GKtt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~ 84 (643)
T PRK07994 14 TFADVV-GQEHV-LTALANGLSL--GRIH-----HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 (643)
T ss_pred CHHHHC-CCHHH-HHHHHHHHHH--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 666653-87999-9999999982--9866-----3487458998888899999999967999999997876776898865
Q ss_pred H-H-----HHHHHCCCHHHHHHHHH---------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 9-9-----99986198899999974---------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 R-F-----ASAIRDNCALNLKDSLR---------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ~-~-----~~a~~~~~~~~fr~~~r---------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
T Consensus 85 g~~~d~~eidaas~~~vd~~rel~~~~~y~p~~~r~kvyiidEvhmls-~~afnalLKtlEePp~hv~filaTT~--~~- 160 (643)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-RHSFNALLKTLEEPPAHVKFLLATTD--PQ- 160 (643)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCC-HHHHHHHHHHHCCCCHHCEEEEECCC--HH-
T ss_conf 898875886367778889999999844668877853699972210158-99999999862378610089986077--45-
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
T Consensus 161 --k~p~TilSRC~---~f~~~~~~~~~i~~~l~~i-----~~~e~i~~~~~al~~ia~~a~gs~rdalsl~dq~i~~~-- 228 (643)
T PRK07994 161 --KLPVTILSRCL---QFHLKALDVEQIRHQLEHI-----LNEEHIAHEPRALQLLARAADGSLRDALSLTDQAIASG-- 228 (643)
T ss_pred --HCCHHHHHHHH---HEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--
T ss_conf --48478997776---5001669999999999999-----99759987889999999974786566888999999865--
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
T Consensus 229 ~~~~~~~~v~~mlg 242 (643)
T PRK07994 229 DGQVSTQAVSAMLG 242 (643)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 89747999999858