HHsearch alignment for GI: 254780627 and conserved domain: PRK08058
>PRK08058 DNA polymerase III subunit delta'; Validated.
Probab=97.15 E-value=0.019 Score=37.48 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=85.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH---------------------HCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 54898627888857999999999986---------------------306881686469888999999986198899999
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIK---------------------RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~---------------------~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~ 255 (502)
T Consensus 29 HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~HPD--~~~i~p~~------~~i~idqiR~L~~ 100 (329)
T PRK08058 29 HAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGNHPD--VHLVAPDG------QSIKKDQIRYLKE 100 (329)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC--EEEECCCC------CCCCHHHHHHHHH
T ss_conf 156557899988999999999997399999999887888999987699997--67745661------4077999999999
Q ss_pred HH--H----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCH
Q ss_conf 97--4----03102054444531750699999999998856987999648756761363034576530211577515888
Q gi|254780627|r 256 SL--R----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 (502)
Q Consensus 256 ~~--r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~ 329 (502)
T Consensus 101 ~~~~~p~~g~~KV~II~~Ae~m~-~~AaNALLKtLEEPp-~~t~fIL~t~~~-~---~lLpTI~SRCq---~i~f~~~~~ 171 (329)
T PRK08058 101 EFSKSGVESNKKVYIIEHADKMT-ASAANSLLKFLEEPS-GDTTAILLTENK-H---QILPTILSRCQ---VVEFRPLPP 171 (329)
T ss_pred HHCCCCCCCCCEEEEEECHHHHC-HHHHHHHHHHHHCCC-CCCEEEEEECCH-H---HHHHHHHHCCE---EEECCCCCH
T ss_conf 96438757886799973477629-999999999864689-786799872996-6---64368863142---565889999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 99999999999886431168978989999998502788899
Q gi|254780627|r 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 (502)
Q Consensus 330 e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~ 370 (502)
T Consensus 172 ~~i~~~L~~---------~~--i~~~~a~-l~a~~~gs~~~ 200 (329)
T PRK08058 172 ESLIQRLQE---------EG--ISESLAT-LLAQLTNSVEE 200 (329)
T ss_pred HHHHHHHHH---------CC--CCHHHHH-HHHHHCCCHHH
T ss_conf 999999998---------79--9989999-99987899999